PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g034990.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 429aa    MW: 46552.6 Da    PI: 9.3766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g034990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.4e-06181203223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        CpdCg++F+  ++L++H+ + H
  Sopen04g034990.1 181 ACPDCGEVFPKIESLEHHQAVkH 203
                       6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.58180204IPR007087Zinc finger, C2H2
PROSITE patternPS000280180203IPR007087Zinc finger, C2H2
SuperFamilySSF563994.8E-19205425No hitNo description
Gene3DG3DSA:3.90.228.101.4E-7207425IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MALLTFLPET SEKNQPSKRR KKQQKQNKEK QKQPSSWDQF KNLLTCKQIE NSTVHDPASK  60
NPPSSSAAPT AGAYSKLSSC SSICSFRDVV HGNTRVVHRA DNSPESSSLG QETRLLSKNK  120
TSHHGPSSSS SRSLARSNGS GSSTYTTSSR GMQFRKLSGC YECHMIVDPS RYPLPRSTIC  180
ACPDCGEVFP KIESLEHHQA VKHAVLELGP EDSSRNIVEI IFKSSWLKKD NPICKIERIL  240
KVHNTKRTIQ RFEDCRDAVK IHAVATGKKN PRCAADGNEL LRFYCTSLTC ALGARGSSSL  300
CGSVPGCGVC TTIRHGFQGN KTSGVRTTAS SGRAHDCLGS GMARRRAMIV CRVIAGRVKQ  360
NVGASPTKEE ENCSVSGSGS DSGLSATGST IYDSVAGHVG IYSNLEELYV FNPRAILPCF  420
VVIYEALES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8097400.0FJ809740.1 Solanum pennellii chromosome 4 clone C04SpBP093E005.P4C04, complete sequence.
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074146.10.0uncharacterized protein LOC107018235
TrEMBLA0A0V0I9M90.0A0A0V0I9M9_SOLCH; Putative C2H2-like zinc finger protein-like
STRINGSolyc04g081370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-149C2H2-like zinc finger protein