![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen04g033710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 499aa MW: 53957.5 Da PI: 7.9454 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sopen04g033710.1 49 FVCEICNKGFQRDQNLQLHRRGH 71 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00018 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Sopen04g033710.1 125 FKCERCTKKYAVHSDWKAHMKTC 147 89*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.64E-7 | 48 | 71 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 48 | 71 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 49 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 49 | 71 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 7.9E-5 | 49 | 71 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 51 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 90 | 120 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.3E-4 | 113 | 146 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.64E-7 | 120 | 146 | No hit | No description |
SMART | SM00355 | 73 | 125 | 145 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 499 aa Download sequence Send to blast |
MAEIEKSAEE SSIQQNFPVK RKRNLPGNPD PEAEVIALSP RTLMATNRFV CEICNKGFQR 60 DQNLQLHRRG HNLPWKLRQR TSNEVKKRVY VCPESTCVHH DPSRALGDLT GIKKHFCRKH 120 GEKKFKCERC TKKYAVHSDW KAHMKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES 180 ARSHQPLMED TNAEGDLKVD ESINKTVSSS SSPPPQPLTP STGVLSPVLS IQSSELPVEY 240 QNQGGVQIQQ AQGTTTPVST TPAITISTAA ANGPSSSKVF ASVFPSSSSA QHVNSSYSDI 300 LRAIETEQVM AVEPISLSLS SSLYLSNNGP SLFQEHTGGH GHGQHYGSAT MQPALSATAL 360 LQKAAQMGST TSNNSFLRGL GLGMSPSTST PEENSLARRT NALGHVKLES NINAEVPGLG 420 IQLHGHSGFT DLMMGPSISH QTSMMFGSKP PTLDFLGLGN GASGTPSSGF SAFLSSMEDG 480 FGVVAEPWDD PSDRKPAML |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-32 | 121 | 182 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-32 | 121 | 182 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT013478 | 0.0 | BT013478.1 Lycopersicon esculentum clone 132154R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015071972.1 | 0.0 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9SCQ6 | 1e-132 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A3Q7G9T0 | 0.0 | A0A3Q7G9T0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g080130.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-111 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|