PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g029390.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 1193aa MW: 129767 Da PI: 5.0067

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g029390.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.8e-05	403	425	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C +C+ +F++k++L +H+ H Sopen04g029390.1 403 QCDKCNVTFNNKDDLLQHQLFsH 425 8******************8777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	3.17E-6	280	326	IPR016177	DNA-binding domain
SMART	SM00355	0.0043	402	425	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.554	402	430	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	404	425	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.2	448	470	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.162	448	475	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	450	470	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1193 aa Download sequence Send to blast
MASVTVDSSS ATVPDGALQA ESIPTVDLRL LSQSELYSLS LCSTAAFNPC RDDDVIIPKI 60 DRSVFNESAG SRKQTYSRLR LAPAATASAS SSAIRSRTPH LRNSPHPLQN PSPNNGPANS 120 ESSQIVTLLK QLFGSGTQKN PTDLVPIRVD YSDSLSVPSH VPVPGLELAN VGSIGQKRKR 180 GRPRKNENGV RVAEVKVDEV VKDIVVYQNV DDSDKEIMNK DGIPVDLAVL GASVDPFGLE 240 LRRRTEGLGS AEELLGFLGR LNGQWGSTRK KRRIVDADDF GSMLPKSWKL LLSIKRKEGR 300 SWLHCRRYIS PNGRQFGTCK EVSSYLLFLR GERNENLPTY VNGSGTVEIT NACALTSDLR 360 IQDGGKKESS VFHNSSPAVG HGELQVLLNF GELSEVQVGD LLQCDKCNVT FNNKDDLLQH 420 QLFSHQRRKS RNGGQSITDG VIIRDGKFEC QFCHKTFEEK HRYNGHVGNH VKKQVKTVDG 480 SLPIKMGGGI EPVVSSGAML REPIMQDSVV LPRNLTENAG VITDAGDNPA PTTKIQEDHM 540 ETDNKLEAEG TSNGCHNQEG SSVSRSPISS NEKTCVDISK VIVGSNIEEP EQEGLLCSND 600 IVDSCGVSME DGKFFPTVDE SKVENGWAVD TDSTTVLCSN PSLPGGNSLI KARQIPHTED 660 HSGKNIDDMN GVSFLAETSK GNTDLKSSTG TPSCDKEGST VDYVGVLSGC IGEHRPSSIM 720 SDIENKECGS LNSNDNKLIM KEDNNSIAPH LDKHVKDTAE RDAVDVSACV LEELGQKKGD 780 ESSLLSPACD KNSEVESLIF NDLKTSAEEP KISELQSVRS NIVGFTSSDN HAVKKVAASD 840 IEKEKSLAFC PLFPAMNARA SCAEDHDTKV YQSTQEGNDL QRSANALFST TNVPEASTKE 900 YTMHRSYNNS LKESKFDGLE HPRHHDLNVV FGNSHVDLSA NLNCTPFQLG MEETYGVQDN 960 LQKRLETDKH GEVGIDLSDS SFKGKTGDFG SNFNTVFPSQ LWNEHKLDEV DNSGKKIITS 1020 FGCGDAKPNE DVMAGSIWRV GVENVMQGGS AGNSTSVAQS SNCFQTYDVL SDKVPNLYGE 1080 NEKYNGNTGF DGLSSDRTGP VEYSFMSTQS SNSLQEEPRV LPYDVDIEQG FNSSFWLGKD 1140 NLMPNLAGSN QVTMVCVWCR NLFYQDSNQL EAGSIGAMCP TCSGSTAGQF SFM

Sequence ? help Back to Top

Protein Sequence Length: 1193 aa Download sequence Send to blast

MASVTVDSSS ATVPDGALQA ESIPTVDLRL LSQSELYSLS LCSTAAFNPC RDDDVIIPKI  60
DRSVFNESAG SRKQTYSRLR LAPAATASAS SSAIRSRTPH LRNSPHPLQN PSPNNGPANS  120
ESSQIVTLLK QLFGSGTQKN PTDLVPIRVD YSDSLSVPSH VPVPGLELAN VGSIGQKRKR  180
GRPRKNENGV RVAEVKVDEV VKDIVVYQNV DDSDKEIMNK DGIPVDLAVL GASVDPFGLE  240
LRRRTEGLGS AEELLGFLGR LNGQWGSTRK KRRIVDADDF GSMLPKSWKL LLSIKRKEGR  300
SWLHCRRYIS PNGRQFGTCK EVSSYLLFLR GERNENLPTY VNGSGTVEIT NACALTSDLR  360
IQDGGKKESS VFHNSSPAVG HGELQVLLNF GELSEVQVGD LLQCDKCNVT FNNKDDLLQH  420
QLFSHQRRKS RNGGQSITDG VIIRDGKFEC QFCHKTFEEK HRYNGHVGNH VKKQVKTVDG  480
SLPIKMGGGI EPVVSSGAML REPIMQDSVV LPRNLTENAG VITDAGDNPA PTTKIQEDHM  540
ETDNKLEAEG TSNGCHNQEG SSVSRSPISS NEKTCVDISK VIVGSNIEEP EQEGLLCSND  600
IVDSCGVSME DGKFFPTVDE SKVENGWAVD TDSTTVLCSN PSLPGGNSLI KARQIPHTED  660
HSGKNIDDMN GVSFLAETSK GNTDLKSSTG TPSCDKEGST VDYVGVLSGC IGEHRPSSIM  720
SDIENKECGS LNSNDNKLIM KEDNNSIAPH LDKHVKDTAE RDAVDVSACV LEELGQKKGD  780
ESSLLSPACD KNSEVESLIF NDLKTSAEEP KISELQSVRS NIVGFTSSDN HAVKKVAASD  840
IEKEKSLAFC PLFPAMNARA SCAEDHDTKV YQSTQEGNDL QRSANALFST TNVPEASTKE  900
YTMHRSYNNS LKESKFDGLE HPRHHDLNVV FGNSHVDLSA NLNCTPFQLG MEETYGVQDN  960
LQKRLETDKH GEVGIDLSDS SFKGKTGDFG SNFNTVFPSQ LWNEHKLDEV DNSGKKIITS  1020
FGCGDAKPNE DVMAGSIWRV GVENVMQGGS AGNSTSVAQS SNCFQTYDVL SDKVPNLYGE  1080
NEKYNGNTGF DGLSSDRTGP VEYSFMSTQS SNSLQEEPRV LPYDVDIEQG FNSSFWLGKD  1140
NLMPNLAGSN QVTMVCVWCR NLFYQDSNQL EAGSIGAMCP TCSGSTAGQF SFM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015071665.1	0.0	uncharacterized protein LOC107015775 isoform X2
TrEMBL	A0A3Q7G7E5	0.0	A0A3Q7G7E5_SOLLC; Uncharacterized protein
STRING	Solyc04g074250.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19