PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g014010.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 389aa    MW: 43150.7 Da    PI: 8.4223
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g014010.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.96.1e-191151343
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                      ien+s r+v++ kR +g lKKA+ELS+LCd+e+av+i s+ 
  Sopen04g014010.1 11 IENESDRKVSYKKREKGFLKKAHELSTLCDVEIAVVIDSPY 51
                      9************************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.867147IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-21395IPR002100Transcription factor, MADS-box
CDDcd002667.95E-23384No hitNo description
PRINTSPR004041.1E-11323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-171153IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MPRNKVILSL IENESDRKVS YKKREKGFLK KAHELSTLCD VEIAVVIDSP YNNEPTIFPN  60
YSAAINTFIK FKELPTLEKS KDMVTREEFT KKRIEKIEKK LLKVRKQNRL KEITNDMYEV  120
TKGKDVSPNM DPYYFNDLSY VIKKNIMQIR KAMNGEEVCT INVPQPIVES IIIGGTNSGG  180
TKATLLAPAS SLLPMNPLES PSMVHGGINF DKTKTPPFVP NVAPTTVPLS ASPKVTQQML  240
HLADPSRTPI KMVPLMNTSQ INPSPLFSSY IFPSIVPNLV STIPQQAARG NPGMDVSMTS  300
TIMSSLMPSP MIAPPLCTSL TPQMDPSADL SPMGSSMPIN NHQNYTTNSP QSPQLSELLN  360
WNNDDVVTLL EDPSLHNINS QDPNHTNNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010319640.10.0agamous-like MADS-box protein AGL80
TrEMBLM1CY430.0M1CY43_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000772580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-21M-type_MADS family protein