PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g004580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 599aa MW: 67363.1 Da PI: 9.4574 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.1 | 8e-12 | 53 | 98 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 ++GVr +k rg +vAe +dp + kr++ g+f taeeA +a+ a + Sopen04g004580.1 53 FSGVRKRK-RGEYVAEKWDPI----TkKRVWMGTFNTAEEASEAYLAKQCE 98 78***999.8******99962....36******************987665 PP | |||||||
2 | AP2 | 35.9 | 1.9e-11 | 217 | 259 | 2 | 48 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaia 48 g G+r k +gr+ AeIrdp + k+++lg+f t eeA +a+ Sopen04g004580.1 217 GLLGIRKQK-NGRYSAEIRDPI----KhKQVWLGTFNTIEEASQAYLS 259 566999888.8*********72....46*****************975 PP | |||||||
3 | AP2 | 32 | 3e-10 | 308 | 355 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 ++ GVr + +g++ +eI p ++ k+++lg+fgt eeA a+ ++++ Sopen04g004580.1 308 RIIGVRKNQ-WGKYTSEIINP----ISkKKIWLGTFGTYEEASLAYQSKKLEF 355 789***888.*******9996....246*****************98777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.01E-14 | 51 | 92 | No hit | No description |
SMART | SM00380 | 2.4E-9 | 52 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-14 | 52 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.025 | 52 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-5 | 53 | 64 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-7 | 53 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-10 | 53 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.7E-5 | 75 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.56E-11 | 216 | 260 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.525 | 217 | 276 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-5 | 219 | 263 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-13 | 220 | 257 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.27E-13 | 220 | 257 | No hit | No description |
Pfam | PF00847 | 3.7E-5 | 220 | 261 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-6 | 307 | 355 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-5 | 308 | 362 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.735 | 308 | 374 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-11 | 309 | 357 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-13 | 311 | 356 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.43E-12 | 311 | 356 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MESAGANAEE NRSSVSAHHM YDKMPSSNSA NKSVPAAERS DSIVLGLQNA ANFSGVRKRK 60 RGEYVAEKWD PITKKRVWMG TFNTAEEASE AYLAKQCEFS TARHMLDEMP SSNSTNKTAN 120 AAAGSTDADH GKKPLIQEIS FSHKSMLLGA EWHNMGKLRK KTFKKKQVCK GFNSNMHASN 180 KPINVMNLES CKQTSCSLSK SADRCNTMKR NPKAKSGLLG IRKQKNGRYS AEIRDPIKHK 240 QVWLGTFNTI EEASQAYLSK KSEFDMLTQG YKEDKPNNCD QTKPESSVGA SLSSGGRNKK 300 MDSPKTTRII GVRKNQWGKY TSEIINPISK KKIWLGTFGT YEEASLAYQS KKLEFREIVK 360 PKKKYSKKIH LNAREKQVGK EKIAVNCEGF QPESVAGETF HANLYMKVGV QRSKEAELQS 420 NMPVDFSTGE KQAGKEKLVV NCEAFQSESA AEVTFHANQY MKFDVQRSKE AELQSNIPVD 480 FITAEKQAEK EKLVVNFEGF LPESAAEETF HANQYMKFDV QRSKESELQS KMPVDFSTWE 540 KQGSQEDTDS SMGKWVQLPD GREVKFSLEL GVPIIDKYGS LLGDFCGFDN LWIYDESIY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016572339.1 | 1e-107 | PREDICTED: uncharacterized protein LOC107870354 | ||||
TrEMBL | A0A3Q7FWN8 | 0.0 | A0A3Q7FWN8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g009450.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16587 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-14 | ERF family protein |