PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g003710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 715aa MW: 80044.6 Da PI: 6.2415 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 8e-06 | 125 | 145 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ff++ G+C GdrC+F H Sopen04g003710.1 125 VPCIFFQQ-GFCLKGDRCPFFH 145 79******.***********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.122 | 31 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 2.7E-11 | 32 | 86 | No hit | No description |
SMART | SM00356 | 0.0023 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.953 | 62 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.015 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.948 | 121 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 122 | 147 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 123 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.089 | 126 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MVGPTPPQKL QIQPPPSSTP AVAPSAEEEA LKRNTDCVYF LASPLTCKKG SECEYRHSDV 60 ARLNPRDCYY WLNGSCLNPK CAFRHPPLDG LLGAQVTTPK GSSAPPVASV APTPNVPYGS 120 SKQGVPCIFF QQGFCLKGDR CPFFHAPLFG SNKAPPHPVS TASASTEKTN FKAFGGLEKC 180 VQEKTFFQAN IWKSGELSVQ AQPVEKLKTP LPKNNAVFNG NVLPSTPVID AAHHRHKPKS 240 VPPPNGNPVG RSNRVQQSAR FDDHSNFPNK DDEISRELSP GFDVLVDDEL RGTDFYHGEG 300 RYGRNGGMNE YDIVRSADYT SVADVDQDMY HDGYGHDSHD RLPGRSGRVQ HRASSERVQG 360 ESTHLERRRY GRAHSPEEVR ESDLRHRLSK HNRVNGLRSV ISHDYASEKH VEDRAYRSSR 420 RDRPYVPSHD SSLASRLRGR IKLPSRSPSP TNGTDMRLDR ARDRGRLSSE RPQLFSQQGR 480 LRDRIKGRVQ DDLNDSGRNN SGPRIRRDVS ENDSNFSGPR SLAELKGRKT AETNEQNIDE 540 QQALGKRKFQ KRDDYQQTGG DNISFDGPMP LQEILKRKRN SKTGMTSDKS EDHQHERNDH 600 SLPVVTSSIS RNNTDFEQKE ESDPPSGVLA DHQSPAHHVA NELEAEEGMI MEEANDQDPE 660 AEGHDQRDGD YDYEQVDGED YNLDEGENID AGEEYLDEDD DDEDEFAKKM GVVFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074034.1 | 0.0 | zinc finger CCCH domain-containing protein 17-like | ||||
TrEMBL | A0A3Q7FW52 | 0.0 | A0A3Q7FW52_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g008550.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |