PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g003650.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 531aa    MW: 58835.9 Da    PI: 9.1028
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g003650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000126686323
                      ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                      C+ C+k F r  nL+ H r H
  Sopen04g003650.1 66 CEVCNKGFQREQNLQLHRRGH 86
                      *******************88 PP
2zf-C2H214.50.0001141163123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k +  +s+ k H +t+
  Sopen04g003650.1 141 FKCEKCSKKYAVQSDWKAHTKTC 163
                       89*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-76386No hitNo description
Gene3DG3DSA:3.30.160.601.0E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0256486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.976486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355160106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-7136161No hitNo description
SMARTSM0035588141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MAGGSSTSSM FFGMREEELS QNQQENLLQA QAPSKKRRNQ PGTPSPDAEV IALSPNTLMA  60
TNRFLCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKNTKEV AKRKVYLCPE PTCVHHEPSR  120
ALGDLTGIKK HYFRKHGEKK FKCEKCSKKY AVQSDWKAHT KTCGTREYRC DCGTLFSRRD  180
SFITHRAFCD ALVQENARNI LSPNSLMNTL GMNNNQYLYG SSSNINLGTF SKLGNNNITK  240
TTTTTTTTSG VQFDHHHDNN LIGSSTTTTT TTNNPFFLQE TNQDHYNANN NNIKPLMVHG  300
LMQLPNLDQN NDHNNNSSSS TTMFNLNFFQ NNLSTNSGIS GDHHHHHRHH DNNSNISCSI  360
PSLYGVQVLE SSNTTFSSGP IMSATALLQK AAQMGSSSTS NISATASLFK AFGSNTSGSS  420
SSGTKSDHQA FNFGSDITDG GIINAYGGGS HEGYNTTTKL NFEQNQGPPQ KKQLTRDFLG  480
VGEIVRSMNG RFSTQREQQQ QNNGLNNMMS SLLDPETNQI QQSFGSATNF Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33137214372Zinc finger protein JACKDAW
5b3h_F9e-33137214372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071951.10.0protein indeterminate-domain 5, chloroplastic-like isoform X2
SwissprotQ8GYC11e-126IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLM1CVT30.0M1CVT3_SOLTU; Uncharacterized protein
STRINGSolyc04g008500.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-101indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]