PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g040470.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 541aa MW: 59174.3 Da PI: 8.9997

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g040470.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Sopen03g040470.1 98 FVCEICNKGFQRDQNLQLHRRGH 120 89*******************88 PP
2	zf-C2H2	13.3	0.00026	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Sopen03g040470.1 174 WKCEKCSKRYAVQSDWKAHSKTC 196 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.8E-5	97	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.15E-6	97	120	No hit	No description
PROSITE profile	PS50157	10.949	98	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	98	120	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2
SMART	SM00355	250	139	169	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	162	195	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.15E-6	169	194	No hit	No description
SMART	SM00355	130	174	194	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MMMKDLMNQQ AQVPGVVMEE NMSNLTSASG EASVSSSNRN DNNNNNIYPH HQYNFAPPNQ 60 QTQPAQQIKK KRNQPGNPDP EAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH 120 NLPWKLKQRT SKEIRKKVYV CPETSCVHHD PARALGDLTG IKKHFCRKHG EKKWKCEKCS 180 KRYAVQSDWK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITGNPILP 240 SQAGSSTSQM NFQFQPFNHE IPVTFSLKKE QQTGFNLRPE IPPWLLVGGG PGPGPGPGPP 300 QPQPIGLSSS IFQSSRFSDQ DYTQSHHQQQ QGFMNPNPSL SGPTSGAMAS PHISATALLQ 360 KAAQMGATMS NKASTVSAVS SGPGPAMLMR PHQIHVSATA TAAESVSNAT DFGLNLSSRE 420 DLTTGFFNSL ASYGNKAANP SVVITPVTIP LSTAPHPTPS SLQDMMNSFS SVNPTGFEGS 480 NFEDPFSILN PKNNNGSVND DMTKDFLGLR PLSHSDIFNI AGLVNSTPNE TQSQNHKTWQ 540 S

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MMMKDLMNQQ AQVPGVVMEE NMSNLTSASG EASVSSSNRN DNNNNNIYPH HQYNFAPPNQ  60
QTQPAQQIKK KRNQPGNPDP EAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH  120
NLPWKLKQRT SKEIRKKVYV CPETSCVHHD PARALGDLTG IKKHFCRKHG EKKWKCEKCS  180
KRYAVQSDWK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITGNPILP  240
SQAGSSTSQM NFQFQPFNHE IPVTFSLKKE QQTGFNLRPE IPPWLLVGGG PGPGPGPGPP  300
QPQPIGLSSS IFQSSRFSDQ DYTQSHHQQQ QGFMNPNPSL SGPTSGAMAS PHISATALLQ  360
KAAQMGATMS NKASTVSAVS SGPGPAMLMR PHQIHVSATA TAAESVSNAT DFGLNLSSRE  420
DLTTGFFNSL ASYGNKAANP SVVITPVTIP LSTAPHPTPS SLQDMMNSFS SVNPTGFEGS  480
NFEDPFSILN PKNNNGSVND DMTKDFLGLR PLSHSDIFNI AGLVNSTPNE TQSQNHKTWQ  540
S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	170	231	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-35	170	231	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	136	KLKQRTSKEIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013659	0.0	BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015070300.1	0.0	protein indeterminate-domain 7-like
Refseq	XP_015070301.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-128	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A3Q7FXF1	0.0	A0A3Q7FXF1_SOLLC; Uncharacterized protein
STRING	Solyc03g121660.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-114	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]