PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g033360.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 452aa    MW: 51527.8 Da    PI: 7.1175
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g033360.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.61.4e-2051303128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       +G+rFhPtd el+ +yLk+  +g+ +  +++ i+ +diy    Pw++   ++ eek  yf ++ +k+  +++r +r+ ++g+Wk +  ++ + 
  Sopen03g033360.1   5 MGIRFHPTDTELI-NYLKRFFKGELCLNQQCpIQFADIYGDqPPWEIF-GANFEEKFRYFITPLKKRRIKDTRFSRTCAKGTWKGQTGEELIR 95 
                       7************.9*********96666777*******87368***6.556677888**************************766667776 PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  g +vg k+ + f   +++ g++ +W+m ey++
  Sopen03g033360.1  96 RNsLGPVVGFKRKFRFE-TSDQCGQNKTWLMIEYQV 130
                       6546778*********7.789999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.7723154IPR003441NAC domain
PfamPF023651.5E-145130IPR003441NAC domain
SuperFamilySSF1019415.62E-225154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSKQMGIRFH PTDTELINYL KRFFKGELCL NQQCPIQFAD IYGDQPPWEI FGANFEEKFR  60
YFITPLKKRR IKDTRFSRTC AKGTWKGQTG EELIRRNSLG PVVGFKRKFR FETSDQCGQN  120
KTWLMIEYQV ADSFFKENKH ILKEDFVVCQ IKKKKIMDKE KNADHVIEAQ AGDVAGSIDP  180
MLLEPNHNNV YSTREDQVRV CDEVEATTTE FDVRNTMEKR ETALEVQQGN GVDDIRSNEF  240
QEMYKQIVSG SRCAVCSATR PFILHLLPYR GIHRHLCTAC VLDSHPGSFC PICFDVFLHN  300
PPPPRLRLLC LKCPSISHLS CVPDAPSGYL CPLCSNPNFT FFYVTPVNNA IEINTHLAKQ  360
LVAAATIVSE SIHNAAVMAR INADIRIKEA LLAKAEAKQV LDRLKYMIDN QNHQFSPIHV  420
SDSSANDTGE NKIYEVKGES SQSSYDCDTM DD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671KKRRIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068972.10.0NAC domain-containing protein 1-like
TrEMBLA0A3Q7GFY91e-159A0A3Q7GFY9_SOLLC; Uncharacterized protein
STRINGSolyc03g114260.1.11e-159(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.14e-14NAC domain containing protein 52