PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g033310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 28085.4 Da PI: 4.9871 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 51.6 | 3.1e-16 | 4 | 100 | 2 | 98 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 p+G+rFhPtd el+ +yLk+ +g+ + e++ i+ vdiy Pw++ ++ eek yf ++ +k++++ +r +r+ ++g+W+ + ++ + Sopen03g033310.1 4 PMGIRFHPTDTELI-NYLKRFFKGELCLHEQCpIQFVDIYGDqPPWEIF-GANYEEKFRYFITPLKKQKSEYTRFSRICAKGTWQGQTGEHLI 94 89************.9*********96665666*******87368***6.555677788**************************77766777 PP NAM 93 lskkge 98 +++++ Sopen03g033310.1 95 RRNRTA 100 665333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-13 | 2 | 119 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 12.755 | 3 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-8 | 4 | 96 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSKPMGIRFH PTDTELINYL KRFFKGELCL HEQCPIQFVD IYGDQPPWEI FGANYEEKFR 60 YFITPLKKQK SEYTRFSRIC AKGTWQGQTG EHLIRRNRTA PVENNHIPKE DFVVCRIKKN 120 KKGKEKNVDH VMEAQDGDVA GIINHMLLEP NHNNDYSIRE DQVRVCDAVE ATTTEFDVQN 180 STYEATTTEK KEATLEVQEG HGVDDIRSNE LQEEMYRAFD DIPFDIPDEW LQNSHVLQDI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345197.1 | 1e-150 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | M1DLM5 | 1e-148 | M1DLM5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400090979 | 1e-149 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-08 | NAC domain containing protein 35 |