PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g014990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 282aa MW: 32936.2 Da PI: 4.5969 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.8 | 2.9e-21 | 5 | 129 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+rFhPtd el+ +yLk+ +g+ +++ i+ +diy Pw++ ++++ek yf ++ +k++ ++kr r+ +g+Wk + + + Sopen03g014990.1 5 MGIRFHPTDTELI-NYLKRFFKGELSLNQQCpIQFADIYGDqPPWEIF-GANSKEKFHYFITPLKKRKIKDKRFCRTCVKGTWKGQTAEDLIR 95 7************.9*******9985444556*******87368***6.56666677789999999999***************999988888 PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g +vg k+ + f +++ g++ +W+m eyr+ Sopen03g014990.1 96 RNsMGPVVGFKRNFRFE--TSECGQNKTWLMIEYRV 129 8656778*********8..788999*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.42 | 3 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-15 | 5 | 129 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.8E-22 | 5 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MSKQMGIRFH PTDTELINYL KRFFKGELSL NQQCPIQFAD IYGDQPPWEI FGANSKEKFH 60 YFITPLKKRK IKDKRFCRTC VKGTWKGQTA EDLIRRNSMG PVVGFKRNFR FETSECGQNK 120 TWLMIEYRVA DSFFKENNHI VKEDFVVCRI KKKKDVDHHV MDAEDGGVAG VIDPMLLLEP 180 NHNNDYSTTE LDQVRVCEAT TLDYDVQNSS TMENRETTLE VEESDRVDGI RSDEDMCRML 240 EDILDVDIPN VIDDIKSDED MYRMFEDIVV GIPDDWLEDS LV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 154 | RIKKKKD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015068732.1 | 0.0 | NAC domain containing protein 50-like | ||||
TrEMBL | A0A3Q7FKY8 | 0.0 | A0A3Q7FKY8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g062670.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 3e-16 | NAC domain containing protein 52 |