PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g006930.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 212aa    MW: 24850.5 Da    PI: 11.126
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g006930.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.1e-1854107457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       ++++++eq++ Le+ F   + ++ +++++LA++lgL+ +qV+vWFqN+Ra++k+
  Sopen03g006930.1  54 KRKLSQEQVNLLEQSFGDAHRLDMKTKAKLASELGLDLQQVTVWFQNKRARWKN 107
                       4589************************************************95 PP
2HD-ZIP_I/II99.33.5e-3253137286
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                       +kr+ls+eqv+lLE+sF   ++L+ + K++la+eLgl+ +qv vWFqn+RAR+k+k+lE++y++Lk++++    e++rLe++ + 
  Sopen03g006930.1  53 RKRKLSQEQVNLLEQSFGDAHRLDMKTKAKLASELGLDLQQVTVWFQNKRARWKNKKLENEYSKLKSQHEITIVEKCRLETQIQW 137
                       8*******************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.59748108IPR001356Homeobox domain
SMARTSM003892.2E-1551112IPR001356Homeobox domain
SuperFamilySSF466893.55E-1653117IPR009057Homeodomain-like
CDDcd000867.14E-1253109No hitNo description
PfamPF000463.7E-1554107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-1955115IPR009057Homeodomain-like
PRINTSPR000312.7E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000312.7E-588104IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTHHQLDDHQ MVMISQYHSG INTQLAQGHQ GEVKPSRRRK KNKGETSNNG VVRKRKLSQE  60
QVNLLEQSFG DAHRLDMKTK AKLASELGLD LQQVTVWFQN KRARWKNKKL ENEYSKLKSQ  120
HEITIVEKCR LETQIQWIGL ALRANRLHRQ GLDRRPQKKL AFLTSESGSP KKWFVVAHKN  180
RRNEGYARFG ARLTFKMDRT GREGYYTKQL MA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13654RRRKKNKGETSNNGVVRKR
23855RKKNKGETSNNGVVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-175HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771769.11e-94homeobox-leucine zipper protein ATHB-21-like
SwissprotO232084e-46ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
SwissprotQ9ZU704e-46ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A3Q7FG299e-88A0A3Q7FG29_SOLLC; Uncharacterized protein
STRINGSolyc03g034150.1.12e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-48homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]