PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g036400.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 332aa    MW: 37245.7 Da    PI: 5.0497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g036400.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.6e-14159206355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h  +Er+RR+r+ + f +L +l+P++     kKl+Ka+iL  A+ YIk+L+
  Sopen02g036400.1 159 QDHVLAERKRRERLTQYFVTLSTLIPNL-----KKLDKASILGDAITYIKQLE 206
                       56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.948156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-12159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17160218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.44E-15161210No hitNo description
SuperFamilySSF474591.96E-17161223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-16162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDISSATWWS EMDVMNMNEL QYIDQTFDDF AFNSDLFTLD NIQVSQSGEI FEEKPAFCSS  60
INQNTSTSPP CSSPSVISFS NSNSPSATPT TTNAQNYFKN LNTSSLKTEV PSGTTINFSS  120
SNTCSDSDYD DSKQLFQAMG FGAGQSKKMN YSRTPLQAQD HVLAERKRRE RLTQYFVTLS  180
TLIPNLKKLD KASILGDAIT YIKQLEEQVK RLDEEANKQP VKRSRLHSNY DNFSTCNENS  240
NKSVVPEIDV RVSDGNVLIR VCCKKQAGII KEIFSQVEMF QLTITSSSVI PFGYDTTLIS  300
IVAQMDHQLD MATEQVANNI RLSIMKLINS HK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065630.10.0transcription factor bHLH18-like
TrEMBLA0A3Q7FAR30.0A0A3Q7FAR3_SOLLC; Uncharacterized protein
STRINGSolyc02g091820.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-42bHLH family protein