PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g036300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 37562.4 Da PI: 5.7086 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 7e-12 | 163 | 206 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Sopen02g036300.1 163 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 206 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.447 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-15 | 160 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-12 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 163 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-4 | 164 | 206 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.8E-15 | 164 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MELTQEDLLE EIVSPRIENW NNTFANAWNI ESPTFYQQNP EFIPSNSSLL DLIMSPSQSN 60 YFPCPDFQES SYPFLHSFTT TTPPQLVIDS SNYNNNIQER AIMEEGQIGH FSADFHGHYE 120 DSFSCYNINK VVKMEEATSR IVGEKKSKNY KVKKVEGQPS KNLMAERRRR KRLNDRLSML 180 RSIVPKISKM DRTSILGDTI DYVKELLDKI NRLHEENEIK DIKFLGNFKG LKTNEALVRN 240 PPKFDVERRN EDETSIEICC GTKPGLLLST VHTMEALGLE VQQCVVSCFS DFSMRASCSE 300 SVDHRTILNS EDVKQALFKT AGYGGRCV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 172 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064269.1 | 0.0 | transcription factor bHLH93-like isoform X1 | ||||
Swissprot | Q9LSL1 | 4e-79 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A3Q7FAM5 | 0.0 | A0A3Q7FAM5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g091690.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA789 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 4e-79 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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