PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g035100.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 364aa    MW: 41192.6 Da    PI: 9.2876
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g035100.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.92e-32230285156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+peLH+rFv+a++qLGG+++AtPk+i+++m+v+gLt+++vkSHLQkYRl+
  Sopen02g035100.1 230 KQRRCWSPELHRRFVDALHQLGGAQVATPKQIRDIMQVDGLTNDEVKSHLQKYRLH 285
                       79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.091227287IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29228288IPR009057Homeodomain-like
SuperFamilySSF466892.24E-17228288IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-26230285IPR006447Myb domain, plants
PfamPF002491.5E-7232283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNIDLNFVYV PKLISDVLTE VSAMDDISKK LKKLNQFLVP LEEELRKIEA FKRELPMCML  60
HLKHAIERLK AQALLYKEKD KSPVMMEEFI PLKKGNSDES GRVKKSNDLT DKKNWMSSAQ  120
LWSTPVQYES FNLQNLKWSG VEEKAKEKQY QLGACKLTSE RGAFLPFQRQ ALKEDKRCLA  180
VKDLSLSMAV TVGEGENRQN PIDVSVKREN GLSNSNGCDV FSHDKSLQRK QRRCWSPELH  240
RRFVDALHQL GGAQVATPKQ IRDIMQVDGL TNDEVKSHLQ KYRLHVRRVP ASGRSWSTVD  300
ETGESSKNNG TQSGSPEGPL HFTGSGSAKG VSVNEEEDNK SESYNWNGQL QKSIEGSTIR  360
SSSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13230283154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13230283154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13230283154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13230283154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13230283255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065159.10.0transcription factor HHO5-like
TrEMBLA0A3Q7FAA10.0A0A3Q7FAA1_SOLLC; Uncharacterized protein
STRINGSolyc02g090400.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.13e-57G2-like family protein