PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g034240.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 402aa    MW: 45502.9 Da    PI: 7.0287
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g034240.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-0662106442
          zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ ++ + C+     lC +C   +H+       H +vp+
  Sopen02g034240.1  62 WICQACERSPVAFLCKAGAASLCTSCDADIHSAsplacrHHRVPI 106
                       79*****************************66999999877775 PP
2CCT60.74.9e-21335378144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea++l+Y+eK+k+RkFeK+irY+ RK++Ae+Rp +KGrF+k++
  Sopen02g034240.1 335 REARVLKYREKKKNRKFEKTIRYALRKVYAETRPKIKGRFAKRT 378
                       9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8121663IPR000315B-box-type zinc finger
SMARTSM003365.4E-81663IPR000315B-box-type zinc finger
CDDcd000214.70E-61963No hitNo description
PROSITE profilePS501199.42859106IPR000315B-box-type zinc finger
CDDcd000215.86E-662106No hitNo description
SMARTSM003360.07164106IPR000315B-box-type zinc finger
PROSITE profilePS5101715.616335377IPR010402CCT domain
PfamPF062033.8E-15335377IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MLKNENSGGF DGSRNNWSRV CDSCRSTACA VYCRADSSFL CAGCDTRMHA ANLLASRHKC  60
VWICQACERS PVAFLCKAGA ASLCTSCDAD IHSASPLACR HHRVPIMPIL GSHTKLILLH  120
WFYNDWWAHR GKREDYGFLR FTQNADDMTV NEEDEDEAAS WLLLNPPVKK NNKNNFDNDN  180
NDQNNNYGTL FGGEVVDDYL DLAEYGGDSQ FNDQYGVNQQ QHHYSVPQKS YHGDSVVPVQ  240
EGQGKSPILY NQQQQQQIHH LNFQLGMEYD NSNTRYGYPA TMSHSVSISS MDVSVIPESA  300
LSETSNSHLR PPKGNMDLFL GPPIQIPPQL TPMDREARVL KYREKKKNRK FEKTIRYALR  360
KVYAETRPKI KGRFAKRTDV AEEDQMLSTQ LMADGIYGIV PS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4997550.0DQ499755.1 Solanum demissum CONSTANS mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068015.10.0LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 2
TrEMBLC0Z3T80.0C0Z3T8_SOLTU; CONSTANS protein
STRINGPGSC0003DMT4000260650.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.11e-96B-box type zinc finger protein with CCT domain