PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g029130.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

DBB

Protein Properties

Length: 182aa MW: 20136.9 Da PI: 7.4347

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g029130.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.1	7.5e-08	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H Sopen02g029130.1 4 LCDVCESAAAILFCAADEAALCRACDEKVH 33 7**************************999 PP
2	zf-B_box	29.4	1.7e-09	52	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ Sopen02g029130.1 52 EVPRCDICENSPAFFYCEVDGSSLCLQCDMMVHVGgkrtHS 92 789***************************99966566675 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.139	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.3E-8	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	8.16E-7	3	45	No hit	No description
Pfam	PF00643	3.3E-6	3	42	IPR000315	B-box-type zinc finger
SuperFamily	SSF57845	8.24E-5	48	88	No hit	No description
PROSITE profile	PS50119	9.371	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.6E-8	51	91	IPR000315	B-box-type zinc finger
SMART	SM00336	1.2E-10	51	96	IPR000315	B-box-type zinc finger
CDD	cd00021	3.99E-7	54	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGIAKP NEVPRCDICE 60 NSPAFFYCEV DGSSLCLQCD MMVHVGGKRT HSRYLLLRQK VEFPGDKSGP TEELARKTLD 120 TGENKKDHSH SPNPMIKDNQ QNHRVSPILI SDGSADGHGK KDKMIDLNVK PSRFHGQASN 180 QD

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-131	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015066178.1	1e-134	B-box zinc finger protein 19-like
Swissprot	C0SVM5	4e-73	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	M0ZW20	1e-125	M0ZW20_SOLTU; B-box zinc finger protein 23
STRING	PGSC0003DMT400009328	1e-126	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3175	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	2e-75	DBB family protein