PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g027430.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 433aa    MW: 49566 Da    PI: 5.8941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g027430.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015152175123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y C+ Cg+ ++++++Lk+H +  H
  Sopen02g027430.1 152 YICSVCGRKCKTHMDLKKHFKQlH 175
                       89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10108.0E-673142IPR029060PIN domain-like
PROSITE profilePS5015711.074152180IPR007087Zinc finger, C2H2
PROSITE patternPS000280154175IPR007087Zinc finger, C2H2
CDDcd061671.16E-11166306No hitNo description
Gene3DG3DSA:3.40.50.10108.0E-6237304IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLMSTVFNSI EPLHLKTSFF SPVSLTTNVT LSFKPSSPIA VPRRPIKWHI SACAAGQEID  60
MERTKQGLYT AKPKKVVILW DLDNKPPRGP PYEAAMSLKR VAQCFGDVVD MSAYANRHAF  120
IHLPQWVVEE RRERRHLDVL ERKGVVTPSE PYICSVCGRK CKTHMDLKKH FKQLHERERE  180
KKLSRMRSLK GKKRQRFKER FVDGNYKYIE AAKSLITPKV GYGLASELRR AGVYVKTVAD  240
KPQAADWALK KQMQHSMSRG IDWLFLISDD SDFCDMLRRA KEANLGTVVV GDWDRALGRH  300
ADLWVPWNGV ENGEITEKDL VLKSERRRES WDRSNAQFSV SEFNGGIGKE GTSLGSLMDD  360
IVEKLESSGT RISAFSEGEE DEEVEELDEE DWLRARLDQR SDDEYNTDDS IVSDEEEGDY  420
LLDSEDEDTG EIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064955.10.0uncharacterized protein LOC107010223
TrEMBLA0A1U8FVB10.0A0A1U8FVB1_CAPAN; uncharacterized protein LOC107859780
STRINGPGSC0003DMT4000038440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-161C2H2-like zinc finger protein