PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g024530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 441aa    MW: 48798.8 Da    PI: 6.2312
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g024530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-053373741254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Sopen02g024530.1 337 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 374
                       677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11335387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-5335378No hitNo description
Gene3DG3DSA:4.10.280.103.6E-9339382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MADEYQASVC GGNWWNSSRS IFGSSLCASS VPLGNSNFAW TNDHLLDIKS SCRSNDESGN  60
SDESVVLQEL PKHDSTLQIL GSGLNSSSTS DNWSHTLMHG NDRSESSYPS ILQQEDINSS  120
MNYQQESGVD CSSNSFKQDF TLGMNHPITS STNTHHDQIS STFPMNSSFS NYPSALLQTL  180
FDNDPPPQQQ QQLQQSLFAT NNNQPMNFPT SSLSYRPDLN DFSPSMPKFP NSLLIPKQTT  240
PSNHFPNYSL NATASLYNTS SATSLSSIRA TLMPSMHPQI LQSPTFNDNS RAPNVTPKCK  300
VEDLRESRVS KKSVNNEATL KRARIETPSP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT  360
ASVLHEAIEY IKFLHDQVNA LSTPYLKNGS TNTQHQQIAD KVKEEDLRSR GLCLVPISST  420
FPVATESSTD FWTPNFGGTF R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063418.10.0transcription factor bHLH112-like
TrEMBLA0A3Q7FRQ90.0A0A3Q7FRQ9_SOLLC; Uncharacterized protein
STRINGSolyc02g079760.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-57bHLH family protein