PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g015430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 203aa MW: 21888.5 Da PI: 8.9516 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.3 | 8.4e-39 | 26 | 86 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCds ntkfCyynny+lsqPr+fCk+CrryWt+GG+lr++P+Ggg+rkn k+s Sopen02g015430.1 26 PDHHLPCPRCDSINTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRDIPIGGGSRKNAKRS 86 67899****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-25 | 22 | 84 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.2E-34 | 28 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.04 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MTLESSEKLV TKQQTGGVQA PPTQEPDHHL PCPRCDSINT KFCYYNNYNL SQPRHFCKSC 60 RRYWTQGGTL RDIPIGGGSR KNAKRSRIYT NTPFSSTIAS VSSHVVPGNS PFMLPLPAAN 120 QLLFGTDVKP INNFTSLLSS HGPGVLALGG IEDMGFGIGR GNVWPFTGAP DSYGRNYNNG 180 GGAGMWQFSG GEGGFVGSGD YFN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065161.1 | 1e-150 | dof zinc finger protein DOF3.4-like | ||||
TrEMBL | A0A3Q7F0C4 | 1e-147 | A0A3Q7F0C4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g065290.1.1 | 1e-148 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4532 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 6e-40 | Dof family protein |