PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g013010.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 405aa MW: 45841.3 Da PI: 4.6727

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g013010.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	40.1	1.1e-12	14	115	19	128
NAM 19 Lkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkgelvglkktLvf 108 L k v+g++ ++ vd+y +P++L +++++++ f ++kk+ +gk+ nr + g Wk ++++v++kk++++g kkt+ f Sopen02g013010.1 14 LVKFVSGNSD----QFQFVDLYGNnKPSQLF-DMTTTDHHHVFTQLKKKKTGNGKNFNRgiVGGGGSWKGIDNSRPVYDKKKTVIGFKKTFRF 101 4555555553....356788886538**6.565655666666667777789**74445899********************** PP NAM 109 ykgrapkgektdWvmheyrl 128 ++ + W+m+eyrl Sopen02g013010.1 102 E--EK----NHVWIMKEYRL 115 7..22....458****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	14.195	1	143	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-15	26	142	IPR003441	NAC domain
Pfam	PF02365	2.5E-6	36	115	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MEMNFDDEQL MISLVKFVSG NSDQFQFVDL YGNNKPSQLF DMTTTDHHHV FTQLKKKKTG 60 NGKNFNRGIV GGGGSWKGID NSRPVYDKKK TVIGFKKTFR FEEKNHVWIM KEYRLCDKIL 120 KALRLRGHTR LEEEFVVCRI TRSVNSSQVS DHKVENFLDS LLISSSQCQD IFAQDQFQDL 180 RQSQFQDLGQ FGAISAQSQF QENLGFGQLS TANVIPSGES NNILNGNIAP VSLVFKESKL 240 CAAIEEECSV HQQTPSVECS DYDIATYHRE LDAYAASVLE STVPYIPQQQ EDEIDSIPPF 300 YQDFYIGHTN NVIPCGPVSL VFKKSKLCAA IEEECSVPQQ TTSVSESDYD IATYHKELDA 360 YAASILETMV PYIPAEPPQE EVDSIPLFSE DFYIGHTNLW SYSNL

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MEMNFDDEQL MISLVKFVSG NSDQFQFVDL YGNNKPSQLF DMTTTDHHHV FTQLKKKKTG  60
NGKNFNRGIV GGGGSWKGID NSRPVYDKKK TVIGFKKTFR FEEKNHVWIM KEYRLCDKIL  120
KALRLRGHTR LEEEFVVCRI TRSVNSSQVS DHKVENFLDS LLISSSQCQD IFAQDQFQDL  180
RQSQFQDLGQ FGAISAQSQF QENLGFGQLS TANVIPSGES NNILNGNIAP VSLVFKESKL  240
CAAIEEECSV HQQTPSVECS DYDIATYHRE LDAYAASVLE STVPYIPQQQ EDEIDSIPPF  300
YQDFYIGHTN NVIPCGPVSL VFKKSKLCAA IEEECSVPQQ TTSVSESDYD IATYHKELDA  360
YAASILETMV PYIPAEPPQE EVDSIPLFSE DFYIGHTNLW SYSNL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015158228.1	1e-139	PREDICTED: uncharacterized protein LOC107057785
TrEMBL	M1C7F1	1e-159	M1C7F1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400061382	1e-160	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3381	10	41