PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g050170.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 304aa    MW: 34371.9 Da    PI: 7.8846
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g050170.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07102144854
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        Er RR+++++ fe+L  l+P++   p  K + + i+ +Av+ I++L
  Sopen01g050170.1 102 TERERRKKMRTQFETLHALVPNL---P-AKADMSKIVYEAVNRIRKL 144
                       6*********************7...3.7888888999999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.38E-792146No hitNo description
PROSITE profilePS5088811.92294144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1094156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-999161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-5102144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.4E-5222284No hitNo description
SuperFamilySSF550211.37E-5223284No hitNo description
CDDcd048733.15E-5226268No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNEDGENNHD HLCDDIWSYL DWNDHQVESG ETEGHKLLDP TGSDTCQPFT AINEVVEVSV  60
NVPKKRSSAN RKKNGKEIAE PNSGVDGAEV RRASKHEVRK WTERERRKKM RTQFETLHAL  120
VPNLPAKADM SKIVYEAVNR IRKLKNTFKK LESQKLKRLE EYNIRLTGSQ KVDNSWEKYV  180
GDQGSTCNSI AITPTNHGAS LLIPTGFMTW SSPNVILNVS GEDAHISVCC PKKPRLFTTI  240
CYVLEKHKID IVSAQISSDQ FRSMFMIQAH AKDGSGVAQF SEAFTVEDMY KQAANEIMLM  300
TTPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089566.20.0transcription factor bHLH95-like
TrEMBLK4AUZ90.0K4AUZ9_SOLLC; Uncharacterized protein
STRINGSolyc01g020170.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-38bHLH family protein