PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g050130.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 302aa    MW: 33756.1 Da    PI: 6.9967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g050130.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-10103146855
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        Er RR+++++ fe+L  l+P++      K +K++i+ +Av++I +Lq
  Sopen01g050130.1 103 TERERRKKMRTLFETLHALVPNL----PAKADKSTIVYEAVNHIVKLQ 146
                       6*********************6....39***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1492156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-1093147No hitNo description
PROSITE profilePS5088813.02795145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1399156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-8103146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-4103151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.98E-5219283No hitNo description
Gene3DG3DSA:3.30.70.2603.4E-5221283No hitNo description
PROSITE profilePS516718.734223302IPR002912ACT domain
CDDcd048731.28E-4224291No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNIDGENNHG LPWETNDFWS YLNDNQVGSE ETFDGDKVPD PTKSDTCQQL TIVNKVVEVT  60
TDVGKKRSPP NRKNNGKGIA EPNLDIGGAE GKRESEHEIH IWTERERRKK MRTLFETLHA  120
LVPNLPAKAD KSTIVYEAVN HIVKLQNTFK KLKNQKLEEY NIGLTGSQKV YNSWEKYVVD  180
QGSTCNSTAI TPTNHGASPL IPTGFMTWSS PNVILNVCGE DAHISVCCPK KSGLFTIICY  240
VLEKHKIDIV SAQISSDQFR SMFMIQAHAK SGRDVAQFSE AFTVEERLKQ AATEIMALAT  300
SK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231394.20.0transcription factor bHLH95-like
TrEMBLA0A3Q7ESB30.0A0A3Q7ESB3_SOLLC; Uncharacterized protein
STRINGSolyc01g107950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-41bHLH family protein