PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g049450.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 217aa    MW: 23740.8 Da    PI: 7.7996
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g049450.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.52.7e-302103197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l++++e++r+++++sl++eA+ r+ +Pv+Gavg++++++++++
  Sopen01g049450.1   2 SCNGCRILRKGCNENCILRQSLqgiesPHAQANATVFVAKFFGRAGLMSFLTSVSESQRPALFQSLLFEACGRTVNPVRGAVGLLWTGNWHVC 94 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelall 97 
                       q+++e++l 
  Sopen01g049450.1  95 QSAVETVLK 103
                       ***998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.5411107IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSCNGCRILR KGCNENCILR QSLQGIESPH AQANATVFVA KFFGRAGLMS FLTSVSESQR  60
PALFQSLLFE ACGRTVNPVR GAVGLLWTGN WHVCQSAVET VLKGGVLRPL PEFSGVTASP  120
EFDSEANDVD LFRSQSSNFR SKRKIVDEVS EDLDLGLTSG SSTMVAGGKL NRRTEKRRAA  180
TPSLNSDESD TTTLESGFVY HQNPEQGNET KLLRLFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069301.11e-160LOB domain-containing protein 37-like
SwissprotQ9FN113e-65LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A3Q7FCC81e-155A0A3Q7FCC8_SOLLC; Uncharacterized protein
STRINGSolyc01g107190.2.11e-156(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-67LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]