PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g049450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23740.8 Da PI: 7.7996 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96.5 | 2.7e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l++++e++r+++++sl++eA+ r+ +Pv+Gavg++++++++++ Sopen01g049450.1 2 SCNGCRILRKGCNENCILRQSLqgiesPHAQANATVFVAKFFGRAGLMSFLTSVSESQRPALFQSLLFEACGRTVNPVRGAVGLLWTGNWHVC 94 6******************************************************************************************** PP DUF260 89 qlkaelall 97 q+++e++l Sopen01g049450.1 95 QSAVETVLK 103 ***998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.541 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-25 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSCNGCRILR KGCNENCILR QSLQGIESPH AQANATVFVA KFFGRAGLMS FLTSVSESQR 60 PALFQSLLFE ACGRTVNPVR GAVGLLWTGN WHVCQSAVET VLKGGVLRPL PEFSGVTASP 120 EFDSEANDVD LFRSQSSNFR SKRKIVDEVS EDLDLGLTSG SSTMVAGGKL NRRTEKRRAA 180 TPSLNSDESD TTTLESGFVY HQNPEQGNET KLLRLFF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069301.1 | 1e-160 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9FN11 | 3e-65 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A3Q7FCC8 | 1e-155 | A0A3Q7FCC8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g107190.2.1 | 1e-156 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-67 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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