PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g044700.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 301aa    MW: 34982.2 Da    PI: 6.2126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g044700.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009161185123
                       EEETTTTEEESSHHHHHHHHHH..T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                       + C+ C+k ++  ++++ H+++  H
  Sopen01g044700.1 161 FFCELCNKQYKLAMEFEAHLSSydH 185
                       67*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004432.3E-1764109IPR000467G-patch domain
PROSITE profilePS5017416.73366111IPR000467G-patch domain
PfamPF015853.1E-1567107IPR000467G-patch domain
PfamPF121716.6E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDDRWFNSRP DMRMRDRRQQ EMEEADEASV LEDLAEDFRL PINHRPTENV DLENVEQASL  60
DTQLTSSNIG FRLLQKMGWK GKGLGKNEQG ITEPIKSGMR DPKLGIGKQE EDDFFTAEEN  120
IQRRKLDIEL EETEELAKKR EVLAEREHKI ETDVKEIRKT FFCELCNKQY KLAMEFEAHL  180
SSYDHNHRKR FKEMREMHGS SRDDRHKREQ QRQEREMAKF AQMAANKKQQ EQQTPEEAGN  240
IPAPSMVRTA TALADQDQRK TLKFGFSAKG GSSKVTTLVN KSAKKPKVTV ASVFSNESDE  300
E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402221e-106AC240222.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-46a2 map 1, complete sequence.
GenBankHG9754401e-106HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-106HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015056401.10.0G patch domain-containing protein 8
RefseqXP_027773580.10.0G patch domain-containing protein 8
TrEMBLA0A3Q7EPG30.0A0A3Q7EPG3_SOLLC; Uncharacterized protein
STRINGSolyc01g101250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86041415