PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g022250.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 77aa    MW: 8728.2 Da    PI: 10.5684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g022250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.6e-10556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT eE+  l+ ++ ++G g W+tI +          R+  ++k++w++ 
  Sopen01g022250.1  5 KQKWTSEEEAALKVGILKHGRGKWRTIVKDPEfsgvfCLRSNVDLKDKWRNM 56
                      79****************************99999**66***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.34E-16270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-13456IPR009057Homeodomain-like
SMARTSM007173.0E-5459IPR001005SANT/Myb domain
PROSITE profilePS500907.375557IPR017877Myb-like domain
PfamPF002492.7E-7556IPR001005SANT/Myb domain
CDDcd116601.77E-16657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKVGI LKHGRGKWRT IVKDPEFSGV FCLRSNVDLK DKWRNMTVMA  60
NGWGSREQAR LAVIPCI
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-78HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352110.12e-44PREDICTED: telomere repeat-binding factor 1-like isoform X4
RefseqXP_015166261.13e-44PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_015166262.13e-44PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_015166263.13e-44PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_015166264.13e-44PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_015166265.12e-44PREDICTED: telomere repeat-binding factor 1-like isoform X2
SwissprotQ8VWK47e-40TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLM1C4E16e-43M1C4E1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000595439e-44(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-42telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]