PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g021920.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 302aa    MW: 33924.5 Da    PI: 7.6859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g021920.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.1e-1196143455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h+  Er RR+++ + f++L +l+P++     +K + ++i+ +Av++I++Lq
  Sopen01g021920.1  96 IHKWTERERRKKMLTLFDTLHDLVPNL----PTKADQSTIVGEAVNHIRELQ 143
                       58889*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1389154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.31E-1190144No hitNo description
PROSITE profilePS5088813.80292142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1296155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-896143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-5100148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNEGGGNDHD ADVWSYLDLN DYQVGSGEKF EGDKVLDLTR SYASQPLTIG NEVLEVNIYA  60
AKKRSPPNRE KNGKGIAEPK SGVDRGGGKR ESKHKIHKWT ERERRKKMLT LFDTLHDLVP  120
NLPTKADQST IVGEAVNHIR ELQNIFKKLK SQKLERLEEY NIRLMSSQKV DNSWEKYVGD  180
QVSTNNSTVI TPTTHGPSPL IPTGFMTWSS PNVILNVCGE DAHISVCFPK NPKLFAIICY  240
VLEKHKIDIL SAQVSSDQFR SMFMIQAHAK GGSELAQFSE VFTVEDMYKQ AAIEIMALTT  300
PK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229120.20.0transcription factor bHLH95-like
TrEMBLA0A3Q7EXJ90.0A0A3Q7EXJ9_SOLLC; Uncharacterized protein
STRINGSolyc01g057300.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-40bHLH family protein