PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g010120.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 315aa    MW: 34812.1 Da    PI: 8.4782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g010120.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-101071481055
                       HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       r+R ++i   f++Lr l+P+ +      K +K++i+ekAv++Ik+Lq
  Sopen01g010120.1 107 RQRTKKIGILFDTLRALIPNiP-----AKADKSTIVEKAVNHIKKLQ 148
                       9*******************88.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.85597147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1499160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12102161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-10102152No hitNo description
SMARTSM003531.1E-7103153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-8107148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.63E-5232287No hitNo description
CDDcd048730.00885237279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNGGGENNHV FPWETNDGWP YQNLNGNQIG SGVTFEGDKL QDPNRFDTYQ PLTAVNEVIE  60
ASTNAGKKRS PPNQKKNGKD IVEPNFGVDG AGDRGGFNHD LHIWTARQRT KKIGILFDTL  120
RALIPNIPAK ADKSTIVEKA VNHIKKLQNT VEKLEQEKLE RLQEQNVRCM SSQKFTNAGN  180
NWEKYLGDQG STHNSSSITS TTHGINSRMV NNNIPTGFVT WSSPNVILNV CGENAHISVC  240
CPKKSGLFTF ICYVLGKHKI EIVSAQVSSD QFRSMFMIQA HAKGGTGTAQ VSEASRVEEM  300
YKQVAIEIMS FATPN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168363.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLK4CS820.0K4CS82_SOLLC; Uncharacterized protein
STRINGSolyc09g018150.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.16e-16bHLH family protein