PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g009900.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 315aa    MW: 35113.1 Da    PI: 7.004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g009900.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.31e-06105147854
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        Er R ++i   fe+Lr l+P+     s K +  +i  +Av++I +L
  Sopen01g009900.1 105 TERERTKKIGILFETLRALIPNI----SAKADECTIIDEAVNHILKL 147
                       6*********************6....69***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.5697147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-12100158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-9101159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.17E-7102149No hitNo description
SMARTSM003530.0028105153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.87E-5233290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNGGGESNHV FPWEIDDVWS YLNLNDNQIG SGATFEGDMM SDPLRFDTYQ PLTVVNEVVE  60
SSTNVAKKRS PPNSKKNGKK IAEPKSSADG VGDREGLEHE IHIWTERERT KKIGILFETL  120
RALIPNISAK ADECTIIDEA VNHILKLKNT FEKLKRKKLE GLQEHNIRLM SSQKFPDVGN  180
SWENYLGDQG TTSNSSFIKP KIHGATPLMV NNNIPTSFMT WSSPDMILNV CGKDAHISVC  240
CPKKLGLFTF ICYVLGKHNI EIVSAQVSPD QSRTMFMIQA HAKGGIGIAQ FSEAPTVEEI  300
YKQVAIKIMS FETPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004228808.30.0transcription factor bHLH95-like
TrEMBLA0A3Q7EBD90.0A0A3Q7EBD9_SOLLC; Uncharacterized protein
STRINGSolyc01g014910.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-34bHLH family protein