PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g005670.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 537aa    MW: 58711.5 Da    PI: 7.0893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g005670.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-09356404355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen01g005670.1 356 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 404
                       58*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.14E-11351408No hitNo description
SuperFamilySSF474595.76E-17351422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.497353403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-17354421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-6356404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-10359409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDMGSKNDTQ GHKRNKDATN FQSPNISLDW QLSGSNLTNA SMGMIPNSNP LVDSVFPTIW  60
DRPPNSSHLG FYGNNNANAQ ISPCIMNQHE TAAIGSVPAR GSMSWNPLNS MLKGAMFVPP  120
IPGMIPQSLA QLPADSGFIE RAARFSCFSG GNFNDMMNRP LSVPESTKPC SRGPAPTWRT  180
EEVLASNGLN SPSAVDPRKQ NIRSGVDGSK DVSLPHENKT HEQSPLKIEK KNEIFARSQD  240
EGKESVGLSG NESDEAECSG RQEEMGSAGL ESSAKSLGSR KRKKYSQGTE RDRMKRVQQL  300
PAEPDKELIE TQKGDGSLHS PSSKHGGKNS KQRSQSSDPP KEEYIHVRAR RGQATNSHSL  360
AERVRREKIS ERMKFLQDLV PGCDKVTGKA VMLDEIINYV QSLQRQVEFL SMKLSTVNPR  420
LDFNLDGVLT KDSQAGPSSA LAFPPDNMTM TYASLHGWQS GLLQSGLPGD GNCIDAFRRS  480
ITQFSSMSGG YRDPSSQVPS VWDDQLHNVV DMGFTSTAPL DCQDLSSLPP DQMKTEP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279283RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062943.10.0transcription factor bHLH49-like
RefseqXP_015062944.10.0transcription factor bHLH49-like
RefseqXP_015062946.10.0transcription factor bHLH49-like
TrEMBLA0A3Q7ETA60.0A0A3Q7ETA6_SOLLC; Uncharacterized protein
STRINGSolyc01g010130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28712150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-103bHLH family protein