PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g004250.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 348aa    MW: 38853.9 Da    PI: 9.4333
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g004250.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.11.4e-064199361
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61
                      + k  rr+ +NReAAr+sR+RKk     + +  k +    + Lk  +++l+    kl++
  Sopen01g004250.2 41 DQKTLRRLSQNREAARKSRLRKKVDSLTYGNNTKDIFRRYTPLKAYVQQLESSRMKLTQ 99
                      67899******************999999999999999888888888888888877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.3E-736106No hitNo description
PROSITE patternPS0003604661IPR004827Basic-leucine zipper domain
PfamPF141448.6E-31147221IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MADVSAMTDT STDVDTDDKN LRYLNSLTLG ATSDASDKTR DQKTLRRLSQ NREAARKSRL  60
RKKVDSLTYG NNTKDIFRRY TPLKAYVQQL ESSRMKLTQL EQELQRARQQ GIYVSSSGDQ  120
SQSMSGNGAL AFDVEYARWL EEHNRRTNEL RGAVSSHAGD GELRIIVDGI LAHYDDLFKI  180
KADAAKADVF HILSGMWKTP AERCFLWLGG FRSSELLKLL INQLEPLTDQ QSLAINNLQQ  240
SSQLAEDALS QGIESLQQSL AETLAGSLGP SGSSGNVANY MGQMAMAMGK LGTLEGFILQ  300
ADNLRQRMLQ QMHRILTTRQ SARALLAIGD YFARLRALSS LWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062252.10.0transcription factor TGA2.2-like
RefseqXP_027769817.10.0transcription factor TGA2.2-like
SwissprotQ415581e-171HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A3Q7EA130.0A0A3Q7EA13_SOLLC; Uncharacterized protein
STRINGSolyc01g008730.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-133bZIP family protein