PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g098370.1.1

Common Name

LOC101262095

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 303aa MW: 33100.3 Da PI: 6.7345

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g098370.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.6	3.3e-34	52	106	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Solyc12g098370.1.1 52 RPRLRWTAELHERFVDAVSQLGGPDKATPKTIMKAMGVKGLTLYHLKSHLQKYRL 106 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-32	49	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.31	49	109	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-17	51	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-24	53	107	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-9	54	105	IPR001005	SANT/Myb domain
Pfam	PF14379	2.3E-25	150	195	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MKMYSSLGID GNGGVNEYHH HHHHLPSLQS SLSGEMTNLA GDACLVLTAD HRPRLRWTAE 60 LHERFVDAVS QLGGPDKATP KTIMKAMGVK GLTLYHLKSH LQKYRLGKQS KEAAESYKDE 120 SCVAESQDTS PSASGSSKVV AQDINDCGYQ VTEAFRVQME VQRRLQEQLE VQRHVQLRIE 180 AQGKYLQTIL EKACKVLNYT SVESPDLDTA REQLSELAIK GATNNCDGIV PVSSLPEVVT 240 SFENKNASDM PASIGECLSS TTTTASPTSI SALKKRPRAL ANGDVLPVEN NMTQVQWMMT 300 SS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g098370.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252994.1	0.0	protein PHR1-LIKE 3-like isoform X1
Swissprot	Q8LAJ7	1e-100	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A3Q7JF25	0.0	A0A3Q7JF25_SOLLC; Uncharacterized protein
STRING	Solyc12g098370.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-82	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc12g098370.1.1
Entrez Gene	101262095

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]