PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc12g088130.1.1

Common Name

LOC101252065

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 337aa MW: 38254.2 Da PI: 4.8348

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g088130.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	6.1e-10	170	212	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N +++ Lr+++Pk + K++ +iL +++Y k+L Solyc12g088130.1.1 170 MAERRRRKRLNGRLSMLRSIVPKiS------KMDRTSILGDTIDYTKEL 212 79*******************66......************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.405	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-14	167	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-10	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-14	170	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-7	170	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00163	170	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEDYYRENEF LLDELFSLRS DLWESTCLPM EINSSSSNLF CNNINYNCFG EIPLPSTTTT 60 TTTTTSFEDY YNNFPINQSQ NYSLLHNEFY TTQKVDVLSP LELTNSFNSQ LDDFSSIYFD 120 VGNFGDCKLE RTQSTASSAA IAPANFNIGA CLDKKSKKKK VNGEPSKNLM AERRRRKRLN 180 GRLSMLRSIV PKISKMDRTS ILGDTIDYTK ELLEKINNLQ QEMELGSNQL SLMSIFKNEK 240 PIEMFVRNSP KFNVERRNNI DTRVEINCAN KSSLLLSTLT TLDALGLEPQ QCVISCFNDF 300 AMQASCCEEM EQRGVTDAEE IKQALFKNAG YVGKCL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	177	KKKVNGEPSKNLMAERRRRKR
2	171	178	ERRRRKRL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g088130.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004252727.1	0.0	transcription factor bHLH93-like
Swissprot	Q9LSL1	1e-67	BH093_ARATH; Transcription factor bHLH93
TrEMBL	M0ZPM3	1e-147	M0ZPM3_SOLTU; Uncharacterized protein
STRING	Solyc12g088130.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97
Representative plant	OGRP2636	11	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-63	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Solyc12g088130.1.1
Entrez Gene	101252065

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]