PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g056750.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 189aa MW: 22455 Da PI: 8.9232 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82 | 6.2e-26 | 105 | 164 | 1 | 59 |
---SS-EEEEEEE--TT-.SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgs.efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk++ ++ r+YY+C+ +gC+ kk+ver+ +d +++++tYeg+Hnhe Solyc12g056750.1.1 105 LDDGYKWRKYGKKKVKSNqKYLRNYYKCSIRGCMIKKRVERDGHDSSYLITTYEGKHNHE 164 59**************873689*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-27 | 92 | 165 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-23 | 98 | 165 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.696 | 100 | 166 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-28 | 105 | 165 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-20 | 106 | 164 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MMTQDFSYNN NFQDFEFSSF LDQLFVDYSP TNNNNFNTCI LENDNSHLMT QDYSYNGISS 60 NSYYATPPNM NHLKEKSKEG IIKKEIKNNE RHVIVLRTKT QLEILDDGYK WRKYGKKKVK 120 SNQKYLRNYY KCSIRGCMIK KRVERDGHDS SYLITTYEGK HNHESYSSII YNHTEVNSEF 180 ELNFHRGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-24 | 94 | 164 | 3 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g056750.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004252561.2 | 1e-137 | probable WRKY transcription factor 51 | ||||
TrEMBL | A0A3Q7JC60 | 1e-136 | A0A3Q7JC60_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g056750.1.1 | 1e-137 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14192 | 10 | 13 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 3e-22 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g056750.1.1 |
Publications ? help Back to Top | |||
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