PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc12g038520.1.1
Common NameLOC101264297
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 448aa    MW: 49537 Da    PI: 8.2969
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc12g038520.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1344.9e-4293168277
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         Cqv+gC +dl+++k+yh+rhkvCe+hsk+++v+v+g++qrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++
  Solyc12g038520.1.1  93 CQVQGCGKDLTSCKDYHKRHKVCEIHSKTAKVIVNGIQQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 168
                         **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-3290154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.42890167IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-3892170IPR004333Transcription factor, SBP-box
PfamPF031101.6E-3193166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MESWSYVSGG KGFVSEESVS VDDGITPCSW SQQGVKVGSQ IRDAFGGEDE SSSKHSSSSF  60
IDLKLGRGRF LDVKNFSLSS TKRNRAGGLN SFCQVQGCGK DLTSCKDYHK RHKVCEIHSK  120
TAKVIVNGIQ QRFCQQCSRF HLLAEFDDGK RSCRKRLAGH NERRRKPHTG LHSGRAGKHF  180
QPYSGTRFQG SSFVTSSFIC QDILGGSLLH QPKHDMHDWY KNVKVEHCSD YSPELTMPFT  240
NKHSQPRPLF TSYHTDKHCP ALHDEGITTI TRSKNNESSN SYLNDIGGSD FVSRSLFHST  300
SIGSDVLNVM DSDSPFQGIS NSGCALSLLS SQSQDSSNYS SVVPPSAHHL ITPRSYNHYN  360
MTQTSECFPE ASPKGSTSTV STIYNLSEVI SAKGQLEHIL RNNCGSLQGS DYVNTKNLLS  420
CEDGTTIDLL QLSSQLHQVE HQRRSMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-29921661084squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc12g038520.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252249.10.0squamosa promoter-binding-like protein 6
RefseqXP_025884439.10.0squamosa promoter-binding-like protein 6
TrEMBLM1C4S20.0M1C4S2_SOLTU; Uncharacterized protein
STRINGSolyc12g038520.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51871639
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.16e-45SBP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]