PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 294aa MW: 32281.1 Da PI: 9.8507

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc12g011190.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	65.3	9.4e-21	32	80	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 k++s++d+sk Fslp+ dAA +Lgvc++vLK+iC ++G+ RWP+Rk++s Solyc12g011190.1.1 32 KSVSFDDVSKLFSLPLSDAAESLGVCASVLKKICYENGLVRWPYRKVSS 80 789*******************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.448	12	101	IPR003035	RWP-RK domain
Pfam	PF02042	2.7E-19	34	80	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSNLQGSAPS SNPNPIQNPN PNPYPKPIMD PKSVSFDDVS KLFSLPLSDA AESLGVCASV 60 LKKICYENGL VRWPYRKVSS GKSIEDIKKE ALREKQERSL EFPKAPGEKN GSLASSAISS 120 FSGSPLPNKS ISSTMEMPRA GVFSQQQGTR NFQSGSSPHF RISNLTKGTS VYDEFKYGFP 180 SDGLSTATYR WWGNKSPDGN QDSKLNDDNA KNSTEQAENV AEKTECQTSV DSTGTTLLTD 240 VRKRAAKEGK ETLRLGVHRR RSAKMLDSTK RKILHQVFKS YFHVHGDMSS MES*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.21510	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc12g011190.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004251823.1	0.0	protein NLP7
TrEMBL	A0A3Q7J4Y8	0.0	A0A3Q7J4Y8_SOLLC; Uncharacterized protein
STRING	Solyc12g011190.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10744	19	21
Representative plant	OGRP8668	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	3e-10	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Solyc12g011190.1.1
Entrez Gene	101264794

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]