PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g010710.1.1
Common NameLOC101248536
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 544aa    MW: 59744.6 Da    PI: 6.5905
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g010710.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-14257316155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Solyc11g010710.1.1 257 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 316
                         57*******************666664478446**********99*************98 PP
2AP249.79.3e-16359410155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Solyc11g010710.1.1 359 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 410
                         57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-17257325IPR016177DNA-binding domain
PfamPF008472.3E-11257316IPR001471AP2/ERF domain
CDDcd000185.05E-22257326No hitNo description
SMARTSM003803.3E-28258330IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-15258325IPR001471AP2/ERF domain
PROSITE profilePS5103219.137258324IPR001471AP2/ERF domain
PRINTSPR003673.8E-6259270IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18359419IPR016177DNA-binding domain
PfamPF008474.8E-10359410IPR001471AP2/ERF domain
CDDcd000181.01E-11359418No hitNo description
PROSITE profilePS5103219.151360418IPR001471AP2/ERF domain
SMARTSM003801.6E-31360424IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18360418IPR001471AP2/ERF domain
PRINTSPR003673.8E-6400420IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAPDNNNWLS FSLSSMEMLN STSSHHHQNN SNNNNSSLLH HHHQSNMKFD LASSSADSHQ  60
YYFADNFFPH GWSNPKPQVM YSEAEKEVIG LNINTDSSIF QNFVENAPPK LEDFFGGDSS  120
SLTQDSSSLT HIYENPNGSA VYDNNNYNEH QDFKNITGFQ AFSTNSGSEV DNSVGTEFGT  180
NESCNELSYS QCVAAAVAAA APPLLPTGGG GGALSLAVNA AAATTTNQCS ENEKAMVAVA  240
DSQSCKKISD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QVYLGGYDKE  300
DKAARAYDLA ALKYWGPTAT TNFPVTNYTK ELEEMKHMTK QEFIASLRRK SSGFSRGASI  360
YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG VNAVTNFEMN  420
RYDVEAIMKS SLPVGGTAKR LKLSLESEQK SSSSNNNNQQ QQMTQCNSSN NINFGAMPPV  480
SAIPCGVPFD NTAPAFYHHN FFQYLHPGNA SVPDASNATT TMAAAMPLLP SAADLFIWPH  540
QSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.230740.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in inflorescence and youg floral mersitems, and in stem procambial cells. In floral mersitems, mostly expressed in the central dome. Disappears progressively from sepal primordia, but accumulates in second, third and fourth whorl organ primordia. Later, confined to occasional patches in stamens and in petal before disparearing progressively from flowers. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, hypocotyl, inflorescence, siliques, and pistils. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16307362}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g010710.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004250153.20.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-162AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A3Q7IQW90.0A0A3Q7IQW9_SOLLC; Uncharacterized protein
STRINGSolyc11g010710.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-139AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  3. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  4. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]