PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Solyc10g078380.1.1 | ||||||||
Common Name | LOC101266278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 29873.4 Da PI: 6.9372 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.2e-11 | 75 | 122 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riNs ++ Lr+ll + Kl+Ka+ L k+v+ +++L Solyc10g078380.1.1 75 AKNHKEAERRRRERINSHLHSLRTLLSCN-----SKLDKASLLAKVVQRVREL 122 579***********************997.....7************999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-12 | 72 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-13 | 72 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.555 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-9 | 76 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-10 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MQQQQEDFQE NLESCNYFSK NKSSSSDNNM MGEYYGFDIE AIKNFCSSSP FYPQHNHVEF 60 QETIESNNNS PESRAKNHKE AERRRRERIN SHLHSLRTLL SCNSKLDKAS LLAKVVQRVR 120 ELKEQTSQIM QSETNLLFPS ETDEITVLSS NDCLADGRLL IKASLCCEDR FDLIPDLIET 180 LKSLGLSPIR AEMVTLGGRI HNVIVLAVDH KKESNNNNTD HDESSLLFLR DALRSIVQRS 240 SYGTGERGKR RRVLGQGTRN Y* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 73 | 85 | RAKNHKEAERRRR |
2 | 81 | 86 | ERRRRE |
3 | 248 | 252 | KRRRV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Solyc10g078380.1.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249130.1 | 0.0 | transcription factor bHLH106 | ||||
Swissprot | O80674 | 1e-51 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A3Q7IKB9 | 0.0 | A0A3Q7IKB9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g078380.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12841 | 17 | 18 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41130.1 | 5e-54 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Solyc10g078380.1.1 |
Entrez Gene | 101266278 |
Publications ? help Back to Top | |||
---|---|---|---|
|