PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc10g018080.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 152aa    MW: 17218.5 Da    PI: 7.0442
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc10g018080.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.66.7e-131665251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        +ien+s r +tfskRr g+ K A EL   Cd++  +++ s++g  y +ss
  Solyc10g018080.1.1 16 KIENESARLTTFSKRRSGLYKIACELVRECDVDLGIVMSSPKGIPYSFSS 65
                        79*****************************************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.339767IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-10766IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-9929IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-161078IPR002100Transcription factor, MADS-box
PfamPF003194.1E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-94465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEHKKTAGCQ KTSLAKIENE SARLTTFSKR RSGLYKIACE LVRECDVDLG IVMSSPKGIP  60
YSFSSQTSNV VINHFINPTA KLSSSDHLVA SEARKRVSQF NDILNELDER EKIANEKLDQ  120
MNEARDLGWW ESIDRLNVHD VMKLEAWLNL H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc10g018080.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4682370.0S.lycopersicum DNA sequence from clone LE_HBa-303A6, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027768133.11e-94agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7ICS41e-108A0A3Q7ICS4_SOLLC; Uncharacterized protein
STRINGSolyc10g018080.1.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-18AGAMOUS-like 29
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]