PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g006640.2.1 | ||||||||
Common Name | LOC101264865 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 387aa MW: 42436.6 Da PI: 6.5121 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.1 | 4.8e-06 | 276 | 314 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Solyc10g006640.2.1 276 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 314 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.027 | 265 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0066 | 271 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.55E-12 | 275 | 334 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.10E-6 | 275 | 318 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.2E-9 | 275 | 331 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MAEEFQLGGG NWWENNTSTS SRNRFDSSGS SITPTTSTSA TTTDYSSNWP IQTNHVDIKP 60 RTFLDSVSVS QSSDHDDKGE GGGGGGGGVL SSHDSNFQIM GLGLTSQPHD WNHQSLLNYE 120 DSSSQMNIRG FSLDQNNSIF SHSSNYEVTD NHQVLHSSTT NSWSKFPQFL RASPSPEQPP 180 LPPPARPLPP PHSQLHFSNN TPFWNASAAS MNDVPSSLFP SNLHNIPNNT TIDEKAKNMG 240 DVRDINRIIS KKTTTIETSN KRPRNETSTP SPIIKVRKEK MGDRITALQQ LVSPFGKTDT 300 ASVLSEAIEY IKFLHDQIGA LSAPYMKSGA SMQHLQSDNK SEDIGEGRNK DLRSRGLCLV 360 PISSTFPVTH ETNVDLWTPT FGSTFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g006640.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC233122 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-12d17 map 10, complete sequence | |||
GenBank | AC240192 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-107b5 map 10, complete sequence | |||
GenBank | AC240224 | 0.0 | Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-61e6 map 10, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248340.1 | 0.0 | transcription factor bHLH123-like | ||||
Swissprot | Q8GXT3 | 4e-62 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A3Q7IAA0 | 0.0 | A0A3Q7IAA0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g006640.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 | Representative plant | OGRP3135 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 2e-63 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g006640.2.1 |
Entrez Gene | 101264865 |
Publications ? help Back to Top | |||
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