PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g074810.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 156aa    MW: 17496.2 Da    PI: 8.7541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g074810.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.4e-057382255
                        HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         Lr+l+P  +   ++K s ++    Av+YIk+Lq
  Solyc09g074810.2.1  7 SLRSLIPIEF--IKGKRSASDHMHAAVNYIKYLQ 38
                        7*******65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.613137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-6447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MANLVTSLRS LIPIEFIKGK RSASDHMHAA VNYIKYLQKN IQELDNTRKC IISLDNQNKS  60
STIVDIFQQN NNCVTVNKCE DGMEILINVN NSNKEDIFSL SKVLRWLLKQ GLNVVSCDNS  120
KKDERTLIRI QCQVSDISSG LTVVGLQKKL TDVIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g074810.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6476010.0Solanum lycopersicum chromosome 9 clone C09HBa0099P03, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326593.11e-106transcription factor bHLH125-like
RefseqXP_010326594.11e-106transcription factor bHLH125-like
TrEMBLA0A3Q7I5D34e-91A0A3Q7I5D3_SOLLC; Uncharacterized protein
STRINGSolyc09g074810.2.11e-107(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.13e-23bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]