PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g079100.2.1 | ||||||||
Common Name | LOC101247051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | YABBY | ||||||||
Protein Properties | Length: 217aa MW: 24172.2 Da PI: 7.6678 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 220.9 | 3.8e-68 | 17 | 179 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesasts 95 seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll l ++ + h s ++ll+e +++ n+ +n++++ ++ + Solyc08g079100.2.1 17 PSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPGWLLPSTnHHHHHFGHTYFSPSHNLLDEISNATPNFLMNQSNSAHEFVQ 107 68***************************************95544433133333333333333347777777777777776666666666 PP YABBY 96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + +++pr+pp v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl Solyc08g079100.2.1 108 LPA----RPGFDDLPRPPPvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 179 655....55788999999989*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-65 | 17 | 179 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.23E-8 | 120 | 173 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 6.6E-5 | 127 | 173 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSSSNSLSLD HLPPPPPSEQ LCYVHCNVCD TVLAVSVPCT SLFKTVTVRC GHCTNLLPGW 60 LLPSTNHHHH HFGHTYFSPS HNLLDEISNA TPNFLMNQSN SAHEFVQLPA RPGFDDLPRP 120 PPVVNRPPEK RQRVPSAYNR FIKEEIQRIK AGNPDISHRE AFSAAAKNWA HFPHIQFGLM 180 PDQTVKRTNV RQQDGEDVLT KDGLFNTSAN VSVSPY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.316 | 0.0 | flower| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in immature organs containing meristems and organ primordia. Expressed in phloem of developing vascular tissues of young seedling shoots. Expressed in the phloem of midvein vasculature of young leaves. Does not show polar expression pattern in leaf primordia. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17676337}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g079100.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353824.1 | 1e-161 | axial regulator YABBY1b | ||||
Swissprot | A2X7Q3 | 2e-78 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 2e-78 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A2I7ZG64 | 1e-159 | A0A2I7ZG64_9SOLN; YABBY3 | ||||
TrEMBL | A0A2I7ZG66 | 1e-159 | A0A2I7ZG66_SOLCE; YABBY3 | ||||
TrEMBL | A0A2I7ZG72 | 1e-159 | A0A2I7ZG72_SOLPI; YABBY3 | ||||
TrEMBL | K4CNR9 | 1e-159 | K4CNR9_SOLLC; YABBY3 | ||||
STRING | Solyc08g079100.2.1 | 1e-160 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 | Representative plant | OGRP4685 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 7e-70 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g079100.2.1 |
Entrez Gene | 101247051 |
Publications ? help Back to Top | |||
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