PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g075110.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 285aa    MW: 32720.1 Da    PI: 4.7042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g075110.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.4e-09165211455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         a +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +YIk Lq
  Solyc08g075110.1.1 165 AQSMAARQRRKKISDKTQELGKLIPGgH------RMNTAEMLQATYKYIKLLQ 211
                         567889*******************955......9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-12158218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-10159213No hitNo description
Gene3DG3DSA:4.10.280.105.5E-11160213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.982161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6165211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MMTMQQLLFD FNYDVEQNFS DENQDCYFDP DEFILPIEMN NSCCFMPEYS VLEKQPKDNH  60
SCFIPEYSVF ENIPKRQKIF QDDFFPNPNS NTITPSTHNS CFMPEYSVFE KQQKLFQDNF  120
HEEGFLPNPP MFEDFALPEI PVPVFSAGVV AKKGGSSNNE KKMSAQSMAA RQRRKKISDK  180
TQELGKLIPG GHRMNTAEML QATYKYIKLL QAQAGILAFI GSYQESFETP NLQKLVGSSL  240
VQEKLYSSEH CLVPKVFVEA LENNQEFQNS QILEEIKTLM KEGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g075110.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246217.10.0transcription factor bHLH53-like
TrEMBLA0A3Q7HSY40.0A0A3Q7HSY4_SOLLC; Uncharacterized protein
STRINGSolyc08g075110.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.15e-26bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]