PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g075090.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 555aa    MW: 64038.7 Da    PI: 9.5277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g075090.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.4e-08165211455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         a +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +YIk Lq
  Solyc08g075090.2.1 165 AQSMAARQRRKKISDKTQELGKLIPGgH------RMNTAEMLQATYKYIKLLQ 211
                         567889*******************955......9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-11158217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.91E-9159213No hitNo description
Gene3DG3DSA:4.10.280.101.4E-10160214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.982161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-6166211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-8167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF080795.2E-27320391IPR012988Ribosomal protein L30, N-terminal
TIGRFAMsTIGR013106.0E-99321554IPR005998Ribosomal protein L7, eukaryotic
CDDcd016579.77E-91395554No hitNo description
SuperFamilySSF551293.14E-59395554IPR016082Ribosomal protein L30, ferredoxin-like fold domain
PfamPF003272.8E-21396446IPR016082Ribosomal protein L30, ferredoxin-like fold domain
Gene3DG3DSA:3.30.1390.209.1E-36396451IPR016082Ribosomal protein L30, ferredoxin-like fold domain
PROSITE patternPS006340414446IPR018038Ribosomal protein L30, conserved site
Gene3DG3DSA:3.30.1390.209.1E-36515554IPR016082Ribosomal protein L30, ferredoxin-like fold domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000463Biological Processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002181Biological Processcytoplasmic translation
GO:0022625Cellular Componentcytosolic large ribosomal subunit
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0044822Molecular Functionpoly(A) RNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MMTMQQLLFD FNYDVEQNFS DENQDCYFDP DEFILPIEMN NSCCFMPEYS VLEKQPKDNH  60
SCFIPEYSVF ENIPKRQKIF QDDFFPNPNS NTITPSTHNS CFMPEYSVFE KQQKLFQDNF  120
HEEGFLPNPP MFEDFALPEI PVPVFSAGVV AKKGGSSNNE KKMSAQSMAA RQRRKKISDK  180
TQELGKLIPG GHRMNTAEML QATYKYIKLL QAQAGILAFI GSYQENEKSF ETSYLQKLVG  240
SSLVQEKLYS SESSIQIYHI SIRPGPYPHQ HRALNFTKTL TQTESPFHLP WAQKSSINPI  300
LFSLLQYQEM GEVVKGAVPV PESVLKKQKR SEEWALAKTQ ELVAAKKKSA ENRKLIYNRA  360
KQYAKEYDQQ EKELIRLKRE ARLKGGFYVD PEAKLLFITR IRGINAMPPQ TKKILQLLRL  420
RQIFNGVFLK VNKATVNMLH RVEPYVTYGY PNLKSIRELI YKRGYGKVDK QRIALTDNAV  480
IEQVLGKYGI ICMEDLVHEI MTVGPHFKQA NNFLWPFQLK APLGGLKKKR NHYVEGGDAG  540
NRENFINELI RRMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_Le1e-1323185548244Ribosomal protein L7
4v7e_CF1e-132318554824460S ribosomal protein L30
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.33990.0cell culture| floral bud| flower| fruit| leaf| root| seed| stem| trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g075090.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085695.20.060S ribosomal protein L7-3-like
STRINGSolyc08g075090.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.16e-21bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]