PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc08g007170.1.1 | ||||||||
Common Name | LOC104648628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 409aa MW: 45773.9 Da PI: 9.3922 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.2 | 2.5e-19 | 32 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt++e+laLiea+re++ +lrrg l+ ++W++v++ + + +++ qC++k+e+l++ry+++k+++ + t + s++ +fd+++ Solyc08g007170.1.1 32 CWTQEETLALIEAYRERWYALRRGYLRTADWDAVAATVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSCpTGRFFSSWFFFDNMD 122 8***********************************9977766667788999*******************99987888899*******98 PP trihelix 87 a 87 a Solyc08g007170.1.1 123 A 123 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-19 | 31 | 124 | No hit | No description |
PROSITE profile | PS50090 | 6.899 | 33 | 93 | IPR017877 | Myb-like domain |
SMART | SM00595 | 1.1E-9 | 40 | 129 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MSSNVDSTVV VAEDAVPEEK PPPPVRRFPP PCWTQEETLA LIEAYRERWY ALRRGYLRTA 60 DWDAVAATVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLSCPTGR FFSSWFFFDN 120 MDAMENGTTV AAIRSNNQQI AEKQQAVTAV SGDGYALKTM MDQNFLKLKI NQKNGIDSPP 180 NFMFNHALAA TKSEKINFAT RIPNGYCSYM DMGSNKQEPP HDVEFSSGYR MKNGISMKAK 240 RTGRIIGDVN GFDRGGGNFV MNPNFDCDEG SEYNGSNASD GFHIRNMGVS SSRRSYNSGN 300 VEQQPNLDSR FSPGLSKFGK KGGGGGGLGM KRGRDPVEEM VLSIKLLGEG FMKMEKMKME 360 MAKEVEQMRM EMEMKRNEMI LESQKQIVEA FVKVLGEVHK NKNAKPES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc08g007170.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010324674.1 | 0.0 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A3Q7HKH7 | 0.0 | A0A3Q7HKH7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc08g007170.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12774 | 16 | 17 | Representative plant | OGRP4059 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 4e-31 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc08g007170.1.1 |
Entrez Gene | 104648628 |
Publications ? help Back to Top | |||
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