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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Solyc07g056280.2.1 |
| Common Name | LOC101248692 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
WRKY |
| Protein Properties |
Length: 323aa MW: 36645 Da PI: 6.448 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Solyc07g056280.2.1 | genome | ITAG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 106.4 | 1.5e-33 | 184 | 241 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
+Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers edp++v++tYeg+Hnh+
Solyc07g056280.2.1 184 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSYEDPSIVITTYEGQHNHH 241
8********************************************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 323 aa
Download sequence Send
to blast |
MSDNNPFNHD YAFPFFGENP SIYGNQANNT QNPHHNHHDF DYSSSYMSNL TECLHGGSMD 60
HYNTLSSAFG MNNCSSSSEV VCPQPSIDHH QECSRKNINS VDNQIPLTPN SLISSSSNSE 120
VGGCHEEDSS KIKKDDDQCE LDGDDDDDDN KSKKVGKLAK KKGEKKQKEP RFAFMTKSEI 180
DNLEDGYRWR KYGQKAVKNS PFPRSYYRCT SQKCSVKKRV ERSYEDPSIV ITTYEGQHNH 240
HCPATLRGNA AAALLSPSFL SSTQQQLYHN PNEQQIFYNP NIPINNSFYN NNYHQQQPQL 300
GPDYQYGLFQ DMVASLINKR EP*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
| Function -- GeneRIF ? help
Back to Top |
- The activation of the salicylic acid pathway during stress-response in tomato induces WRKY16, which in turn modulates transcription of SlTRN1 gene.[WRKY16]
[PMID: 26706073]
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| Publications
? help Back to Top |
- Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
Theor. Appl. Genet., 2005. 112(1): p. 72-84
[PMID:16208505] - Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kim SH, et al.
Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
Mol. Cells, 2014. 37(11): p. 833-40
[PMID:25358503] - Mandal A,Sarkar D,Kundu S,Kundu P
Mechanism of regulation of tomato TRN1 gene expression in late infection with tomato leaf curl New Delhi virus (ToLCNDV).
Plant Sci., 2015. 241: p. 221-37
[PMID:26706073] - Zhao L, et al.
KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
[PMID:29288215]
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