PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g052760.1.1

Common Name

LOC101245562

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 383aa MW: 42923.4 Da PI: 6.8249

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g052760.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	100.2	1.8e-31	140	231	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +++lws++D+++lL+G+ ++k+ +g++p +d++af+ef++++++++vsksql+eKi+rLKkKf ++ k ++ep+f k +d +f++sk Solyc07g052760.1.1 140 PRSLWSDDDQLALLKGIAEYKTVKGMEPNADMTAFHEFIRGKLQVEVSKSQLSEKIKRLKKKFFTNAKG---DEEPVFMKGQDFLVFQHSK 227 6789***********************************************************9998...9************** PP DUF573 94 kiWg 97 +iWg Solyc07g052760.1.1 228 RIWG 231 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	9.8E-25	142	231	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MAPKTKSRLV DQPPSASSSE EQELVEECQE EEEQQQQSRE ETEEEEEPPV VKRSITQKPV 60 KTAQKLQFSS ESDSENGSGS ESKKSDHSPP SPFVSDFTIK PIVSAPSKSA GKRPQEAQKE 120 KGRKKPKIAE EEDKKSAATP RSLWSDDDQL ALLKGIAEYK TVKGMEPNAD MTAFHEFIRG 180 KLQVEVSKSQ LSEKIKRLKK KFFTNAKGDE EPVFMKGQDF LVFQHSKRIW GAPGTSSGVK 240 EIVTNSTNGK AKKTVEAKKS SEPKKSGKVS KHKDDEEHKE EEKQVAVKEV VKEDIVKGDQ 300 QDFQSEYPRL AASFESMSGM FTIYPNGTSF LKEKMSLIAP DKAKVLEEKW KKLEDDEAAL 360 MVKRLDLIAE HYRLVVDAMR GN*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MAPKTKSRLV DQPPSASSSE EQELVEECQE EEEQQQQSRE ETEEEEEPPV VKRSITQKPV  60
KTAQKLQFSS ESDSENGSGS ESKKSDHSPP SPFVSDFTIK PIVSAPSKSA GKRPQEAQKE  120
KGRKKPKIAE EEDKKSAATP RSLWSDDDQL ALLKGIAEYK TVKGMEPNAD MTAFHEFIRG  180
KLQVEVSKSQ LSEKIKRLKK KFFTNAKGDE EPVFMKGQDF LVFQHSKRIW GAPGTSSGVK  240
EIVTNSTNGK AKKTVEAKKS SEPKKSGKVS KHKDDEEHKE EEKQVAVKEV VKEDIVKGDQ  300
QDFQSEYPRL AASFESMSGM FTIYPNGTSF LKEKMSLIAP DKAKVLEEKW KKLEDDEAAL  360
MVKRLDLIAE HYRLVVDAMR GN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.5568	0.0	flower\| leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of tuber formation and persists throughout tuber development. {ECO:0000269\|PubMed:12028578}.
Uniprot	TISSUE SPECIFICITY: Expressed in tubers and in leaves treated with sucrose. {ECO:0000269\|PubMed:12028578}.

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269\|PubMed:12028578}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g052760.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253611	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence
GenBank	BT014165	0.0	Lycopersicon esculentum clone 133289F, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004243442.1	0.0	STOREKEEPER protein
Swissprot	Q94IK2	1e-177	STK_SOLTU; STOREKEEPER protein
TrEMBL	M1CH60	0.0	M1CH60_SOLTU; Uncharacterized protein
STRING	Solyc07g052760.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2369	20	41
Representative plant	OGRP10748	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	4e-22	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Solyc07g052760.1.1
Entrez Gene	101245562

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]