PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g052490.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9634.7 Da PI: 4.6562 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.6e-08 | 35 | 77 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ ++++E+ l+++ + + + W++Ia +++ gR + ++ +w Solyc07g052490.2.1 35 KLEFSEDEEMLIAKMFSLVRER-WSLIAGRIP-GRNADEIEKYWK 77 678*****************99.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.623 | 30 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-5 | 34 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-7 | 36 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-11 | 37 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.34E-7 | 37 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.67E-5 | 37 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MADWNRSSTS DNASVVSPDS TRVVALETTN EETSKLEFSE DEEMLIAKMF SLVRERWSLI 60 AGRIPGRNAD EIEKYWKSKY SKSQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g052490.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352307.1 | 2e-55 | MYB-like transcription factor ATV | ||||
TrEMBL | A0A2H5AJN7 | 5e-54 | A0A2H5AJN7_SOLLC; MYB-like transcriptional factor MYBATV-X1 transcript variant 1 | ||||
STRING | Solyc07g052490.2.1 | 2e-54 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6579 | 19 | 32 | Representative plant | OGRP3921 | 8 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 3e-15 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g052490.2.1 |
Publications ? help Back to Top | |||
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