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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Solyc07g045180.2.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
CO-like |
Protein Properties |
Length: 419aa MW: 46133.5 Da PI: 5.3208 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Solyc07g045180.2.1 | genome | ITAG | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 20.7 | 8.6e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
+C+ ++e++ + +C++++ +lC +C ++H+ H++
Solyc07g045180.2.1 4 ICEYCGEQRSIVYCRSDSACLCLSCDRNIHSAnalsqrHSR 44
7*****************************65677777765 PP
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2 | zf-B_box | 22.3 | 2.7e-07 | 46 | 87 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
+C++++++++++ C + ++ lC++C H + H++
Solyc07g045180.2.1 46 LVCERCNSQPAIFRCVEERVSLCQNCDWLAHASsgtcstHKR 87
68************************9999976777777876 PP
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3 | CCT | 58.9 | 1.8e-20 | 361 | 403 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43
R a++RYkeK+ktR+F+K++rY sRKa+Ae R RvKGrFvk
Solyc07g045180.2.1 361 RSDAVSRYKEKKKTRQFDKRVRYVSRKARAEVRRRVKGRFVKD 403
889**************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MGYICEYCGE QRSIVYCRSD SACLCLSCDR NIHSANALSQ RHSRTLVCER CNSQPAIFRC 60 VEERVSLCQN CDWLAHASSG TCSTHKRQAL SCYTGCPSAV ELSTIWSFIL GDPSVCDSTC 120 EQGMGSMSIT DCQPGDSQHP QVKEKSQDIS SDEAKDLHNL VKSAPFMGSS MPSLDNELPN 180 VELLVASTNL TWSKVKNSGT KGYNDPFYDD FNMDEVDLSI ENYKELFGVS IDNCDQLFKN 240 EDIDDFFGMK DMSVAESSFQ GVNAVEVIVD NGKAPGSAVG KVNAVKSACS NAASAESMMS 300 CKTEPPTLCF AMQQSSFSFS NLTGESNAGD CQDCGASSML RMGEPSWHPP CPESSMPSTS 360 RSDAVSRYKE KKKTRQFDKR VRYVSRKARA EVRRRVKGRF VKDGDAYDYD PLHQTRSY*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G48250.1 | 1e-111 | B-box type zinc finger protein with CCT domain |