PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g039570.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 511aa    MW: 57654.4 Da    PI: 6.1369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g039570.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23.1e-13334379454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L  ++eYI  L
  Solyc07g039570.2.1 334 HHMISERKRREKLNDSFQLLRSLLPPG-----TKKDKASVLASTTEYITCL 379
                         68899********************97.....8***************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.15E-12330384No hitNo description
PROSITE profilePS5088815.243330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-17332398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15334399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-11334379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-14336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MDSIFFLEEG DRTVFLLKIM ESFGCTYICL WQYFQPSNTF MSLGGIYNGE NVVAQRLFEE  60
YKHSWLIMDN GRIPGLAFKN NVPYMELKFA DLQSHASNPV QLQFYYTTIC MGCSIGEIEF  120
GMTSSPQVNL EMGMKNLFPE YFSTRLVLAR PQTLLTNIDQ NRPSPSSSFS LDSPGEYSSL  180
LFNVATTSYV PDAFPEQTVR PVSTSAMPFH QQQPIQTLTQ LRGIQFPGVE TDDAALTRAY  240
LAVMTSPSSS SSSHQSRENI DVPITDYHYQ KSTAFRRFGP GLGRPSNVQI GTSRTIRREN  300
ILRRSIIFFR NLDMMRRKEQ IQANQRALTS TQVHHMISER KRREKLNDSF QLLRSLLPPG  360
TKKDKASVLA STTEYITCLK DQVEELSKKN EIMLNAQALD KSSMMKSNDV GDGNDERVVV  420
EIIKNVSSES ESRTVELQVS VRSGECNVLD LATRLLEFLK TQDNLSLQSV AANTRPSMVT  480
HVSLTITIQG SEWDESGFEE AVKRVVDDLT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338343ERKRRE
2339344RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g039570.2.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108135e-11Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0076H19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774144.10.0putative transcription factor bHLH041 isoform X2
TrEMBLA0A3Q7H7U50.0A0A3Q7H7U5_SOLLC; Uncharacterized protein
STRINGSolyc07g039570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Representative plantOGRP85811114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-53bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]