PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc07g039570.2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 511aa MW: 57654.4 Da PI: 6.1369 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.2 | 3.1e-13 | 334 | 379 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L ++eYI L Solyc07g039570.2.1 334 HHMISERKRREKLNDSFQLLRSLLPPG-----TKKDKASVLASTTEYITCL 379 68899********************97.....8***************877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.15E-12 | 330 | 384 | No hit | No description |
PROSITE profile | PS50888 | 15.243 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-17 | 332 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 334 | 399 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.9E-11 | 334 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-14 | 336 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MDSIFFLEEG DRTVFLLKIM ESFGCTYICL WQYFQPSNTF MSLGGIYNGE NVVAQRLFEE 60 YKHSWLIMDN GRIPGLAFKN NVPYMELKFA DLQSHASNPV QLQFYYTTIC MGCSIGEIEF 120 GMTSSPQVNL EMGMKNLFPE YFSTRLVLAR PQTLLTNIDQ NRPSPSSSFS LDSPGEYSSL 180 LFNVATTSYV PDAFPEQTVR PVSTSAMPFH QQQPIQTLTQ LRGIQFPGVE TDDAALTRAY 240 LAVMTSPSSS SSSHQSRENI DVPITDYHYQ KSTAFRRFGP GLGRPSNVQI GTSRTIRREN 300 ILRRSIIFFR NLDMMRRKEQ IQANQRALTS TQVHHMISER KRREKLNDSF QLLRSLLPPG 360 TKKDKASVLA STTEYITCLK DQVEELSKKN EIMLNAQALD KSSMMKSNDV GDGNDERVVV 420 EIIKNVSSES ESRTVELQVS VRSGECNVLD LATRLLEFLK TQDNLSLQSV AANTRPSMVT 480 HVSLTITIQG SEWDESGFEE AVKRVVDDLT * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 338 | 343 | ERKRRE |
2 | 339 | 344 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc07g039570.2.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010813 | 5e-11 | Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0076H19, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027774144.1 | 0.0 | putative transcription factor bHLH041 isoform X2 | ||||
TrEMBL | A0A3Q7H7U5 | 0.0 | A0A3Q7H7U5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g039570.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4567 | 23 | 39 | Representative plant | OGRP8581 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 2e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc07g039570.2.1 |
Publications ? help Back to Top | |||
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